Approximate Bayesian Computation framework for inferring evolutionary parameters of colorectal cancer from methylation arrays.
Clone repo recursively to include submodule
git clone https://github.com/vesmanojlovic/methABC --recursive
Create virtual environment and install dependencies
pyenv virtualenv -m methabc
pip install -e .
pip install -r requirements.txt
If you'd like to recompile methdemon from source (or have to because the included one throws an error), edit the Makefile in resources/methdemon/ to include the path to your copy of the boost C++ library. Then run make all to compile the binary.