v2025.01.13

First official stardis release version.

What's Changed

• Fix package infrastructure to make the notebook work by @jaladh-singhal in #1
• Fix shape errors in the RT calculations by @jaladh-singhal in #2
• Refactor the star_test notebook by @jaladh-singhal in #3
• Fixing spectrum and other small notebook changes by @isaacgsmith in #10
• Laying Groundwork for Complete Broadening Treatment by @isaacgsmith in #11
• Beginnings of new broadening treatment by @isaacgsmith in #12
• Optimise tau_line calculation by @jaladh-singhal in #14
• Add gamma collision calculations (numba jitted) by @jaladh-singhal in #15
• Add Van der Waals broadening and other changes by @isaacgsmith in #16
• Small code restructure by @isaacgsmith in #18
• Run stardis function by @isaacgsmith in #19
• Raytracing at an angle by @isaacgsmith in #20
• Update Docstrings by @isaacgsmith in #21
• Revert "Update Docstrings" by @isaacgsmith in #45
• Added docstrings by @isaacgsmith in #46
• Independent broadening calculations by @isaacgsmith in #47
• New functionality for continuum by @isaacgsmith in #48
• Configuration by @isaacgsmith in #49
• Inputs in frequency or wavelength space by @isaacgsmith in #50
• Change opacity source parsing by @isaacgsmith in #51
• Docstrings and naming changes by @isaacgsmith in #52
• Docs folder by @isaacgsmith in #53
• Add config_schema.yml to setup.cfg by @isaacgsmith in #54
• Fixing create_stellar_plasma bug by @isaacgsmith in #55
• Fixing opacity equations by @isaacgsmith in #56
• Fixing broadening_range bug by @isaacgsmith in #57
• Adding a readme file and basic documentation by @isaacgsmith in #58
• Add new open astronomy testing infrastructure by @wkerzendorf in #63
• Sphinx Documentation Ready to Build by @smokestacklightnin in #69
• Build Sphinx Documentation Using GitHub Actions by @smokestacklightnin in #73
• MARCS model reader and container by @jvshields in #67
• Sphinx docs section running the code by @smokestacklightnin in #78
• Remove old documentation that has been ported to Sphinx by @smokestacklightnin in #79
• Add Black Code Formatting test by @smokestacklightnin in #77
• Add Bibliography to Sphinx Docs by @smokestacklightnin in #81
• Change Physics docs image widths to 500 px by @smokestacklightnin in #82
• Fix for Issue 71 by @smokestacklightnin in #86
• Testing/initial setup by @smokestacklightnin in #83
• Optimize raytrace using njit by @light2802 in #70
• Change Sphinx docs theme from Alabaster to RTD by @smokestacklightnin in #90
• Add marcs test fixture by @smokestacklightnin in #96
• Add geometry by @jvshields in #99
• Add clean-docs.yml by @smokestacklightnin in #89
• Add links to data files, and a fix for bullet points and superscripts in Running the Code docs by @smokestacklightnin in #93
• Run build-docs.yml Only on Main Branch of tardis-sn/stardis by @smokestacklightnin in #84
• Fix typo in raytrace by @smokestacklightnin in #101
• add geometry docstring to model/base by @jvshields in #102
• Add lockfile from Tardis and add Tardis as a dependency within lockfile by @smokestacklightnin in #97
• Cleanup and rename cell length by @jvshields in #100
• Add some basic tests for the Voigt module by @smokestacklightnin in #94
• Add composition by @jvshields in #103
• Add benchmarking workflow using ASV by @light2802 in #74
• Change abundances to mass fraction by @jvshields in #106
• Add cudatoolkit as a dependency by @smokestacklightnin in #105
• Minor clarifying changes to installation docs by @smokestacklightnin in #109
• Swap to new model by @jvshields in #112
• Make Conda Lockfiles Reproducible, Update Numpy Version, Add Cupy as Dependency by @smokestacklightnin in #110
• Add nbmake to test Quickstart notebooks by @smokestacklightnin in #111
• Add next term van noort intensity solver by @jvshields in #120
• add arg to the config_schema.yml file for gzipped and hook up in run_stardis by @jvshields in #116
• Add TARDIS Bot comments from TARDIS Repo by @smokestacklightnin in #80
• change references of shell to depth point throughout code by @jvshields in #121
• Add CUDA GPU JIT compilation to faddeeva() by @smokestacklightnin in #107
• add units to stardis outputs by @jvshields in #122
• Benchmark internal STARDIS functions by @light2802 in #85
• Fix breaking benchmark pipeline by @light2802 in #128
• Refactor and add CUDA JIT compilation to voigt_profile() by @smokestacklightnin in #113
• Add CUDA JIT to calc_n_effective() by @smokestacklightnin in #119
• Revert changes to voigt_profile() formula by @smokestacklightnin in #131
• Restructure: Add radiation field by @jvshields in #123
• Revert "Restructure: Add radiation field" by @jvshields in #133
• Fix benchmarking action not pushing results to the results repo by @light2802 in #136
• Rebased radiation field restructure by @jvshields in #135
• add w2 in the small and large delta tau case by @jvshields in #132
• Combine Running the Code Docs Into Quickstart by @smokestacklightnin in #124
• small benchmarking cleanup by @jvshields in #137
• change STARDISOutput to return the three objects of the simulation by @jvshields in #138
• Add CUDA JIT to calc_doppler_width() by @smokestacklightnin in #118
• Add CUDA JIT to calc_gamma_linear_stark() by @smokestacklightnin in #125
• Add CUDA JIT to calc_gamma_quadratic_stark() by @smokestacklightnin in #126
• Add CUDA JIT to calc_gamma_van_der_waals() by @smokestacklightnin in #127
• Use current tardis by @smokestacklightnin in #142
• Remove tests that use cuda because GitHub doesn't run them by @smokestacklightnin in #144
• Add vald linelist alpha calculation by @jvshields in #141
• Marcs model ingestion bugfix by @jvshields in #147
• Mesa ingestor by @jvshields in #148
• attempt benchmark fix by @jvshields in #153
• Shortlist calculation by @jvshields in #149
• add testing infrastucture by @jvshields in #155
• Add more testing infrastructure by @jvshields in #156
• Cleanup model shape use by @jvshields in #154
• fix linear stark parameter to match paper source by @jvshields in #157
• Improve broadening range treatment by @jvshields in #161
• remove alpha_electron for loop by @jvshields in #163
• give benchmarks.yml a target directory by @jvshields in #166
• fix bug that overwrote first entry in opacities_dict by @jvshields in #164
• Resize elements in physics diagrams by @smokestacklightnin in #95
• change prepare_atom_data() call to work with tardis restructure by @jvshields in #169
• Internal speedup for calculating line opacities by @jvshields in #167
• Further benchmarking by @jvshields in #170
• Investigate continuum deficit by @jvshields in #168
• Make hydrogen ignore broadening mask by @jvshields in #173
• Cleanup calculate broadening by @jvshields in #174
• fix bug in radiative transfer equation by @jvshields in #176
• Change Marcs model file handling in test_model_io.py by @haydenmonk in #175
• Additional continuum opacitiy sources by @jvshields in #177
• fix bug with last depth point out of bounds error by @jvshields in #178
• Line opacity parallelization by @jvshields in #179
• Update voigt profile and add documentation by @jvshields in #182
• Fix parallelism thread usage by @jvshields in #183
• Expose model params by @jvshields in #185
• Adding to Readme by @haydenmonk in #181
• Migrate to tardis composition by @jvshields in #188
• Chemical mass fraction rescaling by @jvshields in #190
• allow user to specify config values to overwrite in run_stardis function by @jvshields in #191
• use string literals and remove delim_whitespace=True by @jvshields in #192
• remove broadening bounds from the config by @jvshields in #194
• update installation instructions and small changes in physics_of_stardis by @jvshields in #193
• fix benchmarks config by @jvshields in #196
• fix TauSobolev import by @jvshields in #199
• handle case of strings in config update by @jvshields in #195
• Make file continuum opacities optional by @jvshields in #197
• add rotation broadening by @jvshields in #198
• add broadening notebook to docs by @jvshields in #200
• interpolate opacities in log space for rad trans by @jvshields in #202
• fix plasma for tardis restructure by @jvshields in #204
• fix plasma for estimator restructure by @jvshields in #205
• pin tardis by @jvshields in #206
• Add broadening notebook to docs by @jvshields in #207
• Update to version of tardis with new atom data by @jvshields in #209
• Basic Regression Data Setup by @atharva-2001 in #213
• Molecules by @jvshields in #210
• simplify updating config logic by @jvshields in #216
• use np interpolator instead of scipy by @jvshields in #217
• Fix NaNs for cool atmospheres with H2+BF and H-FF opacities enabled. by @jvshields in #219
• add microturbulence to simulation by @jvshields in #222
• fix typo pointing to wrong opacity source in logger message by @jvshields in #221
• new Documentation for setting amount of threads used in STARDIS simul… by @RyanGroneck in #228
• Documentation for using MARCS to generate a .mod file for STARDIS by @RyanGroneck in #227
• documentation on types of STARDIS returns (model, plasma, rad-field) by @RyanGroneck in #230
• Documentation for using/getting a new CARSUS atom_data file for STARDIS by @RyanGroneck in #226
• new documentation: using add_config_dict by @RyanGroneck in #231
• documentation fixing headers and index by @RyanGroneck in #233
• vald broadening implementation by @jvshields in #225
• Alan cleanup by @jvshields in #234
• Fixes the broken Mamba installation link on "Downloading and Installation" Page in docs by @Sonu0305 in #241

New Contributors

• @wkerzendorf made their first contribution in #63
• @smokestacklightnin made their first contribution in #69
• @jvshields made their first contribution in #67
• @haydenmonk made their first contribution in #175
• @atharva-2001 made their first contribution in #213
• @RyanGroneck made their first contribution in #228
• @Sonu0305 made their first contribution in #241

Full Changelog: https://github.com/tardis-sn/stardis/commits/v2025.01.13