Replace pip with uv for test workflow (#877)

* replace pip with uv for test workflow * fix * fix * enable uv cache * rerun uv * debug: print uv cache hit status * fix uv cache key * fix syntax uv * rerun uv * rerun uv * fix restore uv cache * clean cache, attemp fix optional dependencies * rerun uv * fix * fix; temporarily disable some tests * fix * fix * rerun uv * add test dependencies explicitly * add lockfile; always call uv sync * fix moved test from dep group to extra * add collect-only for faster ci turnaround * rerun uv * fix * rerun uv * trying out uv cache without cache-suffix * rerun uv * disable cache prune * rerun uv * removing caching mechanism * remove --collect-only from pytest; uv in readthedocs * went back to using pip in readthedocs
scverse · Feb 12, 2025 · f7082d9 · f7082d9
1 parent 4df1912
commit f7082d9
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Showing 2 changed files with 11 additions and 28 deletions.
diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml
@@ -34,37 +34,20 @@ jobs:
 
         steps:
             - uses: actions/checkout@v2
-            - name: Set up Python ${{ matrix.python }}
-              uses: actions/setup-python@v4
+            - uses: astral-sh/setup-uv@v5
+              id: setup-uv
               with:
+                  version: "latest"
                   python-version: ${{ matrix.python }}
-                  cache: pip
-
-            - name: Get pip cache dir
-              id: pip-cache-dir
-              run: |
-                  echo "::set-output name=dir::$(pip cache dir)"
-            - name: Restore pip cache
-              uses: actions/cache@v4
-              with:
-                  path: ${{ steps.pip-cache-dir.outputs.dir }}
-                  key: pip-${{ runner.os }}-${{ env.pythonLocation }}-${{ hashFiles('**/pyproject.toml') }}
-                  restore-keys: |
-                      pip-${{ runner.os }}-${{ env.pythonLocation }}-
-            - name: Install test dependencies
-              run: |
-                  python -m pip install --upgrade pip wheel
-                  pip install pytest-cov
             - name: Install dependencies
-              run: |
-                  pip install ${{ matrix.pip-flags }} -e ".[dev,test,torch]"
+              run: "uv sync --extra test"
             - name: Test
               env:
                   MPLBACKEND: agg
                   PLATFORM: ${{ matrix.os }}
                   DISPLAY: :42
               run: |
-                  pytest --cov --color=yes --cov-report=xml
+                  uv run pytest --cov --color=yes --cov-report=xml
             - name: Upload coverage to Codecov
               uses: codecov/codecov-action@v4
               with:

diff --git a/pyproject.toml b/pyproject.toml
@@ -53,6 +53,12 @@ dependencies = [
 dev = [
     "bump2version",
 ]
+test = [
+    "pytest",
+    "pytest-cov",
+    "pytest-mock",
+    "torch",
+]
 docs = [
     "sphinx>=4.5",
 	"sphinx-autobuild",
@@ -66,12 +72,6 @@ docs = [
     "sphinx-copybutton",
     "sphinx-pytest",
 ]
-test = [
-    "pytest",
-    "pytest-cov",
-    "pytest-mock",
-    "torch",
-]
 benchmark = [
     "asv",
 ]