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Symphony algorithm for inference of cell type specific gene regulatory networks from scRNA-seq and ATAC-seq

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Symphony

Installation

Install Miniconda for Python 3+: https://docs.conda.io/en/latest/miniconda.html

conda create -n SymphonyEnv python=3.6.10 pip
conda activate SymphonyEnv
pip install -r requirements.txt

Running Notebook

jupyter notebook notebooks/SymphonyDemo.ipynb

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Symphony algorithm for inference of cell type specific gene regulatory networks from scRNA-seq and ATAC-seq

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  • Jupyter Notebook 100.0%