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Automated GHA update
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GHA committed Dec 4, 2024
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Expand Up @@ -111,7 +111,7 @@ Suggests: BiocGenerics, RUnit, htmltools
License: Artistic-2.0

Package: bit
Version: 4.5.0
Version: 4.5.0.1
Depends: R (>= 3.4.0)
Suggests: testthat (>= 0.11.0), roxygen2, knitr, markdown, rmarkdown,
microbenchmark, bit64 (>= 4.0.0), ff (>= 4.0.0)
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License: GPL-2 | GPL-3

Package: DEoptimR
Version: 1.1-3
Version: 1.1-3-1
Imports: stats
Enhances: robustbase
License: GPL (>= 2)
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License: GPL

Package: Hmisc
Version: 5.2-0
Version: 5.2-1
Depends: R (>= 4.2.0)
Imports: methods, ggplot2, cluster, rpart, nnet, foreign, gtable, grid,
gridExtra, data.table, htmlTable (>= 1.11.0), viridis,
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License: LGPL-3

Package: later
Version: 1.3.2
Version: 1.4.1
Imports: Rcpp (>= 0.12.9), rlang
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (>= 2.1.0)
Suggests: knitr, nanonext, R6, rmarkdown, testthat (>= 2.1.0)
License: MIT + file LICENSE
Archs: x64

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Archs: x64

Package: parallelly
Version: 1.39.0
Version: 1.40.0
Imports: parallel, tools, utils
Suggests: commonmark, base64enc
License: LGPL (>= 2.1)
Archs: x64

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License: MIT + file LICENSE

Package: progressr
Version: 0.15.0
Version: 0.15.1
Depends: R (>= 3.5.0)
Imports: digest, utils
Suggests: graphics, tcltk, beepr, cli, crayon, pbmcapply, progress,
purrr, foreach, plyr, doFuture, future, future.apply, furrr,
RPushbullet, rstudioapi, shiny, commonmark, base64enc, tools
ntfy, RPushbullet, rstudioapi, shiny, commonmark, base64enc,
tools
License: GPL (>= 3)

Package: promises
Version: 1.3.0
Version: 1.3.2
Imports: fastmap (>= 1.1.0), later, magrittr (>= 1.5), R6, Rcpp, rlang,
stats
LinkingTo: later, Rcpp
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License: GPL (>= 2)

Package: RSQLite
Version: 2.3.8
Version: 2.3.9
Depends: R (>= 3.1.0)
Imports: bit64, blob (>= 1.2.0), DBI (>= 1.2.0), memoise, methods,
pkgconfig, rlang
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Expand Up @@ -783,7 +783,7 @@ Suggests: covr, pkgload, testthat (>= 3.0.0), tibble, withr
License: MIT + file LICENSE

Package: GenomeInfoDb
Version: 1.42.0
Version: 1.42.1
Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.37.0), S4Vectors (>=
0.25.12), IRanges (>= 2.13.12)
Imports: stats, stats4, utils, UCSC.utils, GenomeInfoDbData
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License: GPL

Package: Hmisc
Version: 5.2-0
Version: 5.2-1
Depends: R (>= 4.2.0)
Imports: methods, ggplot2, cluster, rpart, nnet, foreign, gtable, grid,
gridExtra, data.table, htmlTable (>= 1.11.0), viridis,
Expand Down Expand Up @@ -1216,10 +1216,10 @@ Suggests: testit
License: LGPL-3

Package: later
Version: 1.3.2
Version: 1.4.1
Imports: Rcpp (>= 0.12.9), rlang
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (>= 2.1.0)
Suggests: knitr, nanonext, R6, rmarkdown, testthat (>= 2.1.0)
License: MIT + file LICENSE
Archs: x64

Expand Down Expand Up @@ -1719,16 +1719,17 @@ Suggests: Rcpp, testthat (>= 3.0.0), withr
License: MIT + file LICENSE

Package: progressr
Version: 0.15.0
Version: 0.15.1
Depends: R (>= 3.5.0)
Imports: digest, utils
Suggests: graphics, tcltk, beepr, cli, crayon, pbmcapply, progress,
purrr, foreach, plyr, doFuture, future, future.apply, furrr,
RPushbullet, rstudioapi, shiny, commonmark, base64enc, tools
ntfy, RPushbullet, rstudioapi, shiny, commonmark, base64enc,
tools
License: GPL (>= 3)

Package: promises
Version: 1.3.0
Version: 1.3.2
Imports: fastmap (>= 1.1.0), later, magrittr (>= 1.5), R6, Rcpp, rlang,
stats
LinkingTo: later, Rcpp
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20 changes: 10 additions & 10 deletions patRoonDeps-4.3.tsv
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Expand Up @@ -14,7 +14,7 @@ BiocGenerics 0.48.1
BiocManager 1.30.25
BiocParallel 1.36.0
BiocStyle 2.30.0
bit 4.5.0
bit 4.5.0.1
bit64 4.5.2
bitops 1.0-9
blob 1.2.4
Expand Down Expand Up @@ -56,7 +56,7 @@ dbplyr 2.5.0
dbscan 1.2-0
DelayedArray 0.28.0
dendextend 1.19.0
DEoptimR 1.1-3
DEoptimR 1.1-3-1
diagram 1.6.5
digest 0.6.37
docopt 0.7.1
Expand Down Expand Up @@ -117,7 +117,7 @@ hardhat 1.4.0
haven 2.5.4
heatmaply 1.5.0
highr 0.11
Hmisc 5.2-0
Hmisc 5.2-1
hms 1.1.3
htmlTable 2.4.3
htmltools 0.5.8.1
Expand Down Expand Up @@ -145,7 +145,7 @@ KPIC 2.4.0 dd0dddb0cac9bc7882eb1a420c82c9713a8aa0ce
labeling 0.4.3
labelled 2.13.0
lambda.r 1.2.4
later 1.3.2
later 1.4.1
lattice 0.22-6
lava 1.8.0
lazyeval 0.2.2
Expand All @@ -171,7 +171,7 @@ MLmetrics 1.1.3
ModelMetrics 1.2.2.2
modelr 0.1.11
MS2Quant 1.1.0 e2cd1868cfe2cdb085899a7cf3edb145d2820f01
MS2Tox 0.4.2 42c9747ba7cffc61e4e9a28f676b85cc2e1cd8df
MS2Tox 0.4.2 27fb0805a6bcc3b41634dc5d636079390b62173d
MsCoreUtils 1.14.1
MsExperiment 1.4.0
MsFeatures 1.10.0
Expand All @@ -189,8 +189,8 @@ nontarget 2.2 e30221585182bc66e1f8e1113b2c1103a0f2cb56
nontargetData 1.1 75b2a92cd549f72cc71dfe7b86bd42947d62f2c4
numDeriv 2016.8-1.1
openssl 2.2.2
parallelly 1.39.0
patRoon 2.3.3 cbc12002ac7fc40d2478dd86d83a0c690f3dff2a
parallelly 1.40.0
patRoon 2.3.3 0e811b3836ae3004a98b67d11ed59c7c68843016
pcaMethods 1.94.0
permute 0.9-7
pillar 1.9.0
Expand All @@ -206,8 +206,8 @@ pROC 1.18.5
processx 3.8.4
prodlim 2024.06.25
progress 1.2.3
progressr 0.15.0
promises 1.3.0
progressr 0.15.1
promises 1.3.2
ProtGenerics 1.34.0
proxy 0.4-27
ps 1.8.1
Expand Down Expand Up @@ -263,7 +263,7 @@ ropls 1.34.0
rpart 4.1.23
rprojroot 2.0.4
rsm 2.10.5
RSQLite 2.3.8
RSQLite 2.3.9
rstudioapi 0.17.1
rvest 1.0.4
S4Arrays 1.2.1
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Expand Up @@ -95,7 +95,7 @@ GA 3.2.4
gargle 1.5.2
gclus 1.3.2
generics 0.1.3
GenomeInfoDb 1.42.0
GenomeInfoDb 1.42.1
GenomeInfoDbData 1.2.13 b9d26daeee8f21f198372e59b6d712b44348a915
GenomicRanges 1.58.0
getPass 0.2-4
Expand All @@ -116,7 +116,7 @@ hardhat 1.4.0
haven 2.5.4
heatmaply 1.5.0
highr 0.11
Hmisc 5.2-0
Hmisc 5.2-1
hms 1.1.3
htmlTable 2.4.3
htmltools 0.5.8.1
Expand Down Expand Up @@ -144,7 +144,7 @@ KPIC 2.4.0 dd0dddb0cac9bc7882eb1a420c82c9713a8aa0ce
labeling 0.4.3
labelled 2.13.0
lambda.r 1.2.4
later 1.3.2
later 1.4.1
lattice 0.22-6
lava 1.8.0
lazyeval 0.2.2
Expand All @@ -170,7 +170,7 @@ MLmetrics 1.1.3
ModelMetrics 1.2.2.2
modelr 0.1.11
MS2Quant 1.1.0 e2cd1868cfe2cdb085899a7cf3edb145d2820f01
MS2Tox 0.4.2 42c9747ba7cffc61e4e9a28f676b85cc2e1cd8df
MS2Tox 0.4.2 27fb0805a6bcc3b41634dc5d636079390b62173d
MsCoreUtils 1.18.0
MsExperiment 1.8.0
MsFeatures 1.14.0
Expand All @@ -188,7 +188,7 @@ nontargetData 1.1 75b2a92cd549f72cc71dfe7b86bd42947d62f2c4
numDeriv 2016.8-1.1
openssl 2.2.2
parallelly 1.39.0
patRoon 2.3.3 cbc12002ac7fc40d2478dd86d83a0c690f3dff2a
patRoon 2.3.3 0e811b3836ae3004a98b67d11ed59c7c68843016
pcaMethods 1.98.0
permute 0.9-7
pillar 1.9.0
Expand All @@ -204,8 +204,8 @@ pROC 1.18.5
processx 3.8.4
prodlim 2024.06.25
progress 1.2.3
progressr 0.15.0
promises 1.3.0
progressr 0.15.1
promises 1.3.2
ProtGenerics 1.38.0
proxy 0.4-27
ps 1.8.1
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