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Automated GHA update
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GHA committed Jul 12, 2024
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30 changes: 11 additions & 19 deletions bin/windows/contrib/4.3/PACKAGES
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Expand Up @@ -573,14 +573,6 @@ Imports: gtable, grid, grDevices, utils
Suggests: knitr, png
License: GPL-3

Package: ellipsis
Version: 0.3.2
Depends: R (>= 3.2)
Imports: rlang (>= 0.3.0)
Suggests: covr, testthat
License: MIT + file LICENSE
Archs: x64

Package: enviPat
Version: 2.6
License: GPL-2
Expand Down Expand Up @@ -1182,7 +1174,7 @@ Enhances: clustMixType, randomForest, ClustVarLV
License: GPL-2 | GPL-3

Package: knitr
Version: 1.47
Version: 1.48
Depends: R (>= 3.3.0)
Imports: evaluate (>= 0.15), highr (>= 0.11), methods, tools, xfun (>=
0.44), yaml (>= 2.1.19)
Expand Down Expand Up @@ -1951,7 +1943,7 @@ License: GPL (>= 2)
Archs: x64

Package: RcppArmadillo
Version: 0.12.8.4.0
Version: 14.0.0-1
Depends: R (>= 3.3.0)
Imports: Rcpp (>= 1.0.8), stats, utils, methods
LinkingTo: Rcpp
Expand Down Expand Up @@ -2031,13 +2023,13 @@ License: MIT + file LICENSE
Archs: x64

Package: recipes
Version: 1.0.10
Version: 1.1.0
Depends: dplyr (>= 1.1.0), R (>= 3.6)
Imports: cli, clock (>= 0.6.1), ellipsis, generics (>= 0.1.2), glue,
gower, hardhat (>= 1.3.0), ipred (>= 0.9-12), lifecycle (>=
1.0.3), lubridate (>= 1.8.0), magrittr, Matrix, purrr (>=
1.0.0), rlang (>= 1.1.0), stats, tibble, tidyr (>= 1.0.0),
tidyselect (>= 1.2.0), timeDate, utils, vctrs (>= 0.5.0), withr
Imports: cli, clock (>= 0.6.1), generics (>= 0.1.2), glue, gower,
hardhat (>= 1.4.0), ipred (>= 0.9-12), lifecycle (>= 1.0.3),
lubridate (>= 1.8.0), magrittr, Matrix, purrr (>= 1.0.0), rlang
(>= 1.1.0), stats, tibble, tidyr (>= 1.0.0), tidyselect (>=
1.2.0), timeDate, utils, vctrs (>= 0.5.0), withr
Suggests: covr, ddalpha, dials (>= 1.2.0), ggplot2, igraph, kernlab,
knitr, modeldata (>= 0.1.1), parsnip (>= 1.2.0), RANN,
RcppRoll, rmarkdown, rpart, rsample, RSpectra, splines2,
Expand All @@ -2062,13 +2054,13 @@ Suggests: covr, testthat
License: MIT + file LICENSE

Package: reprex
Version: 2.1.0
Version: 2.1.1
Depends: R (>= 3.6)
Imports: callr (>= 3.6.0), cli (>= 3.2.0), clipr (>= 0.4.0), fs, glue,
knitr (>= 1.23), lifecycle, rlang (>= 1.0.0), rmarkdown,
rstudioapi, utils, withr (>= 2.3.0)
Suggests: covr, fortunes, miniUI, rprojroot, sessioninfo, shiny,
spelling, styler (>= 1.2.0), testthat (>= 3.0.2)
spelling, styler (>= 1.2.0), testthat (>= 3.2.1)
License: MIT + file LICENSE

Package: reshape2
Expand Down Expand Up @@ -2731,7 +2723,7 @@ License: Artistic-2.0
Archs: x64

Package: yaml
Version: 2.3.8
Version: 2.3.9
Suggests: RUnit
License: BSD_3_clause + file LICENSE
Archs: x64
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40 changes: 16 additions & 24 deletions bin/windows/contrib/4.4/PACKAGES
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Expand Up @@ -137,7 +137,7 @@ Suggests: covr, crayon, pillar (>= 1.2.1), testthat
License: MIT + file LICENSE

Package: bookdown
Version: 0.39
Version: 0.40
Depends: R (>= 3.5.0)
Imports: htmltools (>= 0.3.6), knitr (>= 1.38), rmarkdown (>= 2.14),
jquerylib, xfun (>= 0.39), tinytex (>= 0.12), yaml (>= 2.1.19)
Expand Down Expand Up @@ -568,14 +568,6 @@ Imports: gtable, grid, grDevices, utils
Suggests: knitr, png
License: GPL-3

Package: ellipsis
Version: 0.3.2
Depends: R (>= 3.2)
Imports: rlang (>= 0.3.0)
Suggests: covr, testthat
License: MIT + file LICENSE
Archs: x64

Package: enviPat
Version: 2.6
License: GPL-2
Expand Down Expand Up @@ -1093,7 +1085,7 @@ License: GPL (>= 2)
Archs: x64

Package: IRanges
Version: 2.38.0
Version: 2.38.1
Depends: R (>= 4.0.0), methods, utils, stats, BiocGenerics (>= 0.39.2),
S4Vectors (>= 0.33.3)
Imports: stats4
Expand Down Expand Up @@ -1177,7 +1169,7 @@ Enhances: clustMixType, randomForest, ClustVarLV
License: GPL-2 | GPL-3

Package: knitr
Version: 1.47
Version: 1.48
Depends: R (>= 3.3.0)
Imports: evaluate (>= 0.15), highr (>= 0.11), methods, tools, xfun (>=
0.44), yaml (>= 2.1.19)
Expand Down Expand Up @@ -1757,7 +1749,7 @@ License: GPL-2
Archs: x64

Package: ps
Version: 1.7.6
Version: 1.7.7
Depends: R (>= 3.4)
Imports: utils
Suggests: callr, covr, curl, pillar, pingr, processx (>= 3.1.0), R6,
Expand Down Expand Up @@ -1792,7 +1784,7 @@ License: GPL-3
Archs: x64

Package: QFeatures
Version: 1.14.1
Version: 1.14.2
Depends: R (>= 4.0), MultiAssayExperiment
Imports: methods, stats, utils, S4Vectors, IRanges,
SummarizedExperiment, BiocGenerics, ProtGenerics (>= 1.35.1),
Expand Down Expand Up @@ -1941,7 +1933,7 @@ License: GPL (>= 2)
Archs: x64

Package: RcppArmadillo
Version: 0.12.8.4.0
Version: 14.0.0-1
Depends: R (>= 3.3.0)
Imports: Rcpp (>= 1.0.8), stats, utils, methods
LinkingTo: Rcpp
Expand Down Expand Up @@ -2013,13 +2005,13 @@ License: MIT + file LICENSE
Archs: x64

Package: recipes
Version: 1.0.10
Version: 1.1.0
Depends: dplyr (>= 1.1.0), R (>= 3.6)
Imports: cli, clock (>= 0.6.1), ellipsis, generics (>= 0.1.2), glue,
gower, hardhat (>= 1.3.0), ipred (>= 0.9-12), lifecycle (>=
1.0.3), lubridate (>= 1.8.0), magrittr, Matrix, purrr (>=
1.0.0), rlang (>= 1.1.0), stats, tibble, tidyr (>= 1.0.0),
tidyselect (>= 1.2.0), timeDate, utils, vctrs (>= 0.5.0), withr
Imports: cli, clock (>= 0.6.1), generics (>= 0.1.2), glue, gower,
hardhat (>= 1.4.0), ipred (>= 0.9-12), lifecycle (>= 1.0.3),
lubridate (>= 1.8.0), magrittr, Matrix, purrr (>= 1.0.0), rlang
(>= 1.1.0), stats, tibble, tidyr (>= 1.0.0), tidyselect (>=
1.2.0), timeDate, utils, vctrs (>= 0.5.0), withr
Suggests: covr, ddalpha, dials (>= 1.2.0), ggplot2, igraph, kernlab,
knitr, modeldata (>= 0.1.1), parsnip (>= 1.2.0), RANN,
RcppRoll, rmarkdown, rpart, rsample, RSpectra, splines2,
Expand All @@ -2044,13 +2036,13 @@ Suggests: covr, testthat
License: MIT + file LICENSE

Package: reprex
Version: 2.1.0
Version: 2.1.1
Depends: R (>= 3.6)
Imports: callr (>= 3.6.0), cli (>= 3.2.0), clipr (>= 0.4.0), fs, glue,
knitr (>= 1.23), lifecycle, rlang (>= 1.0.0), rmarkdown,
rstudioapi, utils, withr (>= 2.3.0)
Suggests: covr, fortunes, miniUI, rprojroot, sessioninfo, shiny,
spelling, styler (>= 1.2.0), testthat (>= 3.0.2)
spelling, styler (>= 1.2.0), testthat (>= 3.2.1)
License: MIT + file LICENSE

Package: reshape2
Expand Down Expand Up @@ -2195,7 +2187,7 @@ License: Artistic-2.0
Archs: x64

Package: S4Vectors
Version: 0.42.0
Version: 0.42.1
Depends: R (>= 4.0.0), methods, utils, stats, stats4, BiocGenerics (>=
0.37.0)
Suggests: IRanges, GenomicRanges, SummarizedExperiment, Matrix,
Expand Down Expand Up @@ -2710,7 +2702,7 @@ License: Artistic-2.0
Archs: x64

Package: yaml
Version: 2.3.8
Version: 2.3.9
Suggests: RUnit
License: BSD_3_clause + file LICENSE
Archs: x64
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13 changes: 6 additions & 7 deletions patRoonDeps-4.3.tsv
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Expand Up @@ -67,7 +67,6 @@ dtplyr 1.3.1
dynamicTreeCut 1.63-1
e1071 1.7-14
egg 0.4.5
ellipsis 0.3.2
enviPat 2.6
enviPick 1.7 d346b23b1f7dc7a226c4e3a45b74fcc617e19c1b
estimability 1.5.1
Expand Down Expand Up @@ -141,7 +140,7 @@ kernlab 0.9-32
KernSmooth 2.23-24
keys 0.1.1
klaR 1.7-3
knitr 1.47
knitr 1.48
KPIC 2.4.0 dd0dddb0cac9bc7882eb1a420c82c9713a8aa0ce
labeling 0.4.3
labelled 2.13.0
Expand Down Expand Up @@ -191,7 +190,7 @@ nontargetData 1.1 75b2a92cd549f72cc71dfe7b86bd42947d62f2c4
numDeriv 2016.8-1.1
openssl 2.2.0
parallelly 1.37.1
patRoon 2.3.1 fa5adc282e2a452155840f2abf41f1b41e2f1c5e
patRoon 2.3.1 fe4ad4ec8f2db7fdb550caa958bcf4eaa93ec139
pcaMethods 1.94.0
permute 0.9-7
pillar 1.9.0
Expand Down Expand Up @@ -235,7 +234,7 @@ rcdk 3.8.1
rcdklibs 2.9
RColorBrewer 1.1-3
Rcpp 1.0.12
RcppArmadillo 0.12.8.4.0
RcppArmadillo 14.0.0-1
RCurl 1.98-1.14
RDCOMClient 0.95-1 1554833f8659461427a93732119756ae1c25bc32
Rdisop 1.65.1 37d44575b7f2aa6530d79208c0fb05fcc7b84e19
Expand All @@ -245,11 +244,11 @@ reactR 0.6.0
readMzXmlData 2.8.3
readr 2.1.5
readxl 1.4.3
recipes 1.0.10
recipes 1.1.0
registry 0.5-1
rematch 2.0.0
rematch2 2.1.2
reprex 2.1.0
reprex 2.1.1
reshape2 1.4.4
Rgraphviz 2.46.0
rhandsontable 0.3.8
Expand Down Expand Up @@ -324,5 +323,5 @@ XML 3.99-0.17
xml2 1.3.6
xtable 1.8-4
XVector 0.42.0
yaml 2.3.8
yaml 2.3.9
zlibbioc 1.48.2
23 changes: 11 additions & 12 deletions patRoonDeps-4.4.tsv
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Expand Up @@ -18,7 +18,7 @@ bit 4.0.5
bit64 4.0.5
bitops 1.0-7
blob 1.2.4
bookdown 0.39
bookdown 0.40
broom 1.0.6
bslib 0.7.0
ca 0.71.1
Expand Down Expand Up @@ -66,7 +66,6 @@ dtplyr 1.3.1
dynamicTreeCut 1.63-1
e1071 1.7-14
egg 0.4.5
ellipsis 0.3.2
enviPat 2.6
enviPick 1.7 d346b23b1f7dc7a226c4e3a45b74fcc617e19c1b
estimability 1.5.1
Expand Down Expand Up @@ -129,7 +128,7 @@ igraph 2.0.3
impute 1.78.0
InterpretMSSpectrum 1.3.3 0731d92accdf5db2a6d7b03c24b2d324b67b1c72
ipred 0.9-14
IRanges 2.38.0
IRanges 2.38.1
isoband 0.2.7
iterators 1.0.14
itertools 0.1-3
Expand All @@ -140,7 +139,7 @@ kernlab 0.9-32
KernSmooth 2.23-24
keys 0.1.1
klaR 1.7-3
knitr 1.47
knitr 1.48
KPIC 2.4.0 dd0dddb0cac9bc7882eb1a420c82c9713a8aa0ce
labeling 0.4.3
labelled 2.13.0
Expand Down Expand Up @@ -189,7 +188,7 @@ nontargetData 1.1 75b2a92cd549f72cc71dfe7b86bd42947d62f2c4
numDeriv 2016.8-1.1
openssl 2.2.0
parallelly 1.37.1
patRoon 2.3.1 fa5adc282e2a452155840f2abf41f1b41e2f1c5e
patRoon 2.3.1 fe4ad4ec8f2db7fdb550caa958bcf4eaa93ec139
pcaMethods 1.96.0
permute 0.9-7
pillar 1.9.0
Expand All @@ -209,11 +208,11 @@ progressr 0.14.0
promises 1.3.0
ProtGenerics 1.36.0
proxy 0.4-27
ps 1.7.6
ps 1.7.7
PSMatch 1.8.0
purrr 1.0.2
qap 0.1-2
QFeatures 1.14.1
QFeatures 1.14.2
qlcMatrix 0.9.8 d49da5a5a8975b3c346823981c00217fbdc6074c
qqman 0.1.9
questionr 0.7.8
Expand All @@ -233,7 +232,7 @@ rcdk 3.8.1
rcdklibs 2.9
RColorBrewer 1.1-3
Rcpp 1.0.12
RcppArmadillo 0.12.8.4.0
RcppArmadillo 14.0.0-1
RDCOMClient 0.95-1 1554833f8659461427a93732119756ae1c25bc32
Rdisop 1.65.1 37d44575b7f2aa6530d79208c0fb05fcc7b84e19
Rdpack 2.6
Expand All @@ -242,11 +241,11 @@ reactR 0.6.0
readMzXmlData 2.8.3
readr 2.1.5
readxl 1.4.3
recipes 1.0.10
recipes 1.1.0
registry 0.5-1
rematch 2.0.0
rematch2 2.1.2
reprex 2.1.0
reprex 2.1.1
reshape2 1.4.4
Rgraphviz 2.48.0
rhandsontable 0.3.8
Expand All @@ -264,7 +263,7 @@ RSQLite 2.3.7
rstudioapi 0.16.0
rvest 1.0.4
S4Arrays 1.4.1
S4Vectors 0.42.0
S4Vectors 0.42.1
sass 0.4.9
scales 1.3.0
selectr 0.4-2
Expand Down Expand Up @@ -321,5 +320,5 @@ XML 3.99-0.17
xml2 1.3.6
xtable 1.8-4
XVector 0.44.0
yaml 2.3.8
yaml 2.3.9
zlibbioc 1.50.0

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