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feat: reword cli help #116

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@ivan-aksamentov ivan-aksamentov commented Jan 22, 2025

This removes dev jargon from the help text. Non-technical users might not be familiar with it.

Also added a link to mmseqs while we are on it.

Also updated reference docs (autogenerated)

This removes dev jargon from the help test. Non-technical users might not be familiar with it.

Also added a link to mmseqs while we are on it.
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