IRMA update: Add amended consensus output and run info #6689
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wm75
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Jan 22, 2025
tools/irma/irma.xml
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| <data name="PB1" format="fasta" from_work_dir="resultDir/amended_consensus/resultDir_1.fa" label="PB1"/> | ||
| <data name="PB2" format="fasta" from_work_dir="resultDir/amended_consensus/resultDir_2.fa" label="PB2"/> |
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also further down in the bam and vcf collections
wm75
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Jan 22, 2025
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Adds IRMAs output: amended consensus fasta as optional output & logs/run_info.txt, which includes meta data for the IRMA run (optional aswell).
Added a new test, that covers these 2 new outputs.
FOR CONTRIBUTOR: