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VQS parameters
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mbaudis committed Feb 6, 2025
1 parent 897f84d commit d2035af
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62 changes: 61 additions & 1 deletion docs/generated/requestProfiles_VQSrequest.md
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# Beacon VQS Request Examples
# Beacon VQS Requests

This represents the generic collection of variant parameters supported in Beacon v2+ requests.

* `assemblyId`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/Assembly`
* `referenceName`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/RefSeqId`
* `referenceBases`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/ReferenceBases`
* `alternateBases`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/AlternateBases`
* `variantType`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/VariantType`
* `start`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/Start`
* `end`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/End`
* `geneId`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/GeneId`
* `aminoacidChange`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/AminoacidChange`
* `genomicAlleleShortForm`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/GenomicAlleleShortForm`
* `variantMinLength`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/VariantMinLength`
* `variantMaxLength`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/VariantMaxLength`
* `requestProfileId`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/RequestProfileId`
* `referenceAccession`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/RefgetAccession`
* `start`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/SequenceStart`
* `end`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/SequenceEnd`
* `sequence`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/Sequence`
* `copyChange`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/CopyChange`
* `adjacencyAccession`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/AdjacencyAccession`
* `adjacencyStart`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/AdjacencyStart`
* `adjacencyEnd`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/AdjacencyEnd`
* `repeatSubunitLength`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/RepeatSubunitLength`
* `geneId`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/GeneId`
* `aminoacidChange`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/AminoacidChange`
* `genomicAlleleShortForm`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/GenomicAlleleShortForm`
* `sequenceLength`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/SequenceLength`
* `variantMinLength`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/VariantMinLength`
* `variantMaxLength`:
- `$ref`: `./common/requestParameterComponents.yaml#/$defs/VariantMaxLength`


## Beacon v2+/VQS "VRSified" Request Examples



### Query for a focal deletion involving TP53
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2 changes: 0 additions & 2 deletions docs/generated/requestProfiles_g_variant.md
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Expand Up @@ -32,8 +32,6 @@ This represents the generic collection of variant parameters allowed in Beacon v

## Beacon v2 Request Examples

This represents the generic collection of variant parameters allowed in Beacon v2 requests.



### Find small, _variable_ sequence insertions/deletions at an approximate position
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