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build(deps): bump the python-packages group with 5 updates #502

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merged 1 commit into from
Feb 3, 2025

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@dependabot dependabot bot commented on behalf of github Feb 1, 2025

Bumps the python-packages group with 5 updates:

Package From To
scikit-learn 1.6.0 1.6.1
boto3 1.35.88 1.36.3
pre-commit 4.0.1 4.1.0
commitizen 4.1.0 4.1.1
ruff 0.8.4 0.9.4

Updates scikit-learn from 1.6.0 to 1.6.1

Release notes

Sourced from scikit-learn's releases.

Scikit-learn 1.6.1

We're happy to announce the 1.6.1 release.

This release contains fixes for a few regressions introduced in 1.6.

You can see the changelog here: https://scikit-learn.org/stable/whats_new/v1.6.html#version-1-6-1

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds can be installed using:

conda install -c conda-forge scikit-learn

Thanks to everyone who contributed to this release !

Commits
  • f159b78 trigger wheel builder [cd build]
  • 73cca70 generate changelog
  • afaa070 bump version
  • 1f43fd2 DOC: Updates to Macro vs micro-averaging in plot_roc.py (#29845)
  • ea8a725 🔒 🤖 CI Update lock files for main CI build(s) 🔒 🤖 (#30593)
  • bc291f1 🔒 🤖 CI Update lock files for scipy-dev CI build(s) 🔒 🤖 ...
  • f5f2b9c 🔒 🤖 CI Update lock files for free-threaded CI build(s) 🔒 :rob...
  • acbb862 TST Fix doctest due to GradientBoostingClassifier difference with scipy 1.15 ...
  • 42831e5 FIX warn if an estimator does have a concrete sklearn_tags implementation...
  • 0d2ce43 FIX change FutureWarnings to DeprecationWarnings for the tags (#30573)
  • Additional commits viewable in compare view

Updates boto3 from 1.35.88 to 1.36.3

Commits
  • 50e6c29 Merge branch 'release-1.36.3'
  • 0bdee9a Bumping version to 1.36.3
  • 974e859 Add changelog entries from botocore
  • 1e2006c Merge pull request #4404 from boto/dependabot/github_actions/github/codeql-ac...
  • f866568 Merge pull request #4403 from boto/dependabot/github_actions/aws-actions/stal...
  • 4b6d32a Bump github/codeql-action from 3.27.0 to 3.28.1
  • 216d629 Bump aws-actions/stale-issue-cleanup
  • 2d89f4d Merge branch 'release-1.36.2'
  • 084e802 Merge branch 'release-1.36.2' into develop
  • 3632dae Bumping version to 1.36.2
  • Additional commits viewable in compare view

Updates pre-commit from 4.0.1 to 4.1.0

Release notes

Sourced from pre-commit's releases.

pre-commit v4.1.0

Features

Fixes

Changelog

Sourced from pre-commit's changelog.

4.1.0 - 2025-01-20

Features

Fixes

Commits
  • b152e92 v4.1.0
  • c3125a4 Merge pull request #3389 from lorenzwalthert/dev-always-unset-renv
  • c2c061c fix: ensure env patch is applied for vanilla emulation
  • cd429db Merge pull request #3382 from pre-commit/pre-commit-ci-update-config
  • 9b9f8e2 [pre-commit.ci] pre-commit autoupdate
  • 86300a4 Merge pull request #3376 from pre-commit/r-gone
  • 77edad8 install r on ubuntu runners
  • 18b3939 Merge pull request #3375 from pre-commit/dotnet-tests-ubuntu-latest
  • 31cb945 Merge pull request #3374 from pre-commit/docker-image-tests-ubuntu-22-not-pre...
  • 28c3d81 update .net tests to use .net 8
  • Additional commits viewable in compare view

Updates commitizen from 4.1.0 to 4.1.1

Release notes

Sourced from commitizen's releases.

v4.1.1 (2025-01-26)

Fix

  • get-next-bump: add a test case
  • get-next-bump: fix to permit usage of --get-next options even when update_changelog_on_bump is set to true

[master c6119812] bump: version 4.1.0 → 4.1.1 4 files changed, 11 insertions(+), 4 deletions(-)

Changelog

Sourced from commitizen's changelog.

v4.1.1 (2025-01-26)

Fix

  • get-next-bump: add a test case
  • get-next-bump: fix to permit usage of --get-next options even when update_changelog_on_bump is set to true
Commits
  • c611981 bump: version 4.1.0 → 4.1.1
  • d20580d fix(get-next-bump): add a test case
  • ed8f083 fix(get-next-bump): fix to permit usage of --get-next options even when updat...
  • 15c29df build(deps-dev): bump pytest-regressions from 2.6.0 to 2.7.0
  • 2902d5a build(deps-dev): bump pre-commit from 4.0.1 to 4.1.0
  • f810b2c build(deps): bump importlib-metadata from 8.5.0 to 8.6.1
  • fc96f9c build(deps-dev): bump mkdocs-material from 9.5.49 to 9.5.50
  • 1d8b531 build(deps-dev): bump ruff from 0.8.4 to 0.8.5
  • 2b0bcdd build(deps-dev): bump ipython from 8.18.0 to 8.18.1
  • 8e36610 build(deps-dev): bump mypy from 1.14.0 to 1.14.1
  • Additional commits viewable in compare view

Updates ruff from 0.8.4 to 0.9.4

Release notes

Sourced from ruff's releases.

0.9.4

Release Notes

Preview features

  • [airflow] Extend airflow context parameter check for BaseOperator.execute (AIR302) (#15713)
  • [airflow] Update AIR302 to check for deprecated context keys (#15144)
  • [flake8-bandit] Permit suspicious imports within stub files (S4) (#15822)
  • [pylint] Do not trigger PLR6201 on empty collections (#15732)
  • [refurb] Do not emit diagnostic when loop variables are used outside loop body (FURB122) (#15757)
  • [ruff] Add support for more re patterns (RUF055) (#15764)
  • [ruff] Check for shadowed map before suggesting fix (RUF058) (#15790)
  • [ruff] Do not emit diagnostic when all arguments to zip() are variadic (RUF058) (#15744)
  • [ruff] Parenthesize fix when argument spans multiple lines for unnecessary-round (RUF057) (#15703)

Rule changes

  • Preserve quote style in generated code (#15726, #15778, #15794)
  • [flake8-bugbear] Exempt NewType calls where the original type is immutable (B008) (#15765)
  • [pylint] Honor banned top-level imports by TID253 in PLC0415. (#15628)
  • [pyupgrade] Ignore is_typeddict and TypedDict for deprecated-import (UP035) (#15800)

CLI

  • Fix formatter warning message for flake8-quotes option (#15788)
  • Implement tab autocomplete for ruff config (#15603)

Bug fixes

  • [flake8-comprehensions] Do not emit unnecessary-map diagnostic when lambda has different arity (C417) (#15802)
  • [flake8-comprehensions] Parenthesize sorted when needed for unnecessary-call-around-sorted (C413) (#15825)
  • [pyupgrade] Handle end-of-line comments for quoted-annotation (UP037) (#15824)

Documentation

  • Add missing config docstrings (#15803)
  • Add references to trio.run_process and anyio.run_process (#15761)
  • Use uv init --lib in tutorial (#15718)

Contributors

... (truncated)

Changelog

Sourced from ruff's changelog.

0.9.4

Preview features

  • [airflow] Extend airflow context parameter check for BaseOperator.execute (AIR302) (#15713)
  • [airflow] Update AIR302 to check for deprecated context keys (#15144)
  • [flake8-bandit] Permit suspicious imports within stub files (S4) (#15822)
  • [pylint] Do not trigger PLR6201 on empty collections (#15732)
  • [refurb] Do not emit diagnostic when loop variables are used outside loop body (FURB122) (#15757)
  • [ruff] Add support for more re patterns (RUF055) (#15764)
  • [ruff] Check for shadowed map before suggesting fix (RUF058) (#15790)
  • [ruff] Do not emit diagnostic when all arguments to zip() are variadic (RUF058) (#15744)
  • [ruff] Parenthesize fix when argument spans multiple lines for unnecessary-round (RUF057) (#15703)

Rule changes

  • Preserve quote style in generated code (#15726, #15778, #15794)
  • [flake8-bugbear] Exempt NewType calls where the original type is immutable (B008) (#15765)
  • [pylint] Honor banned top-level imports by TID253 in PLC0415. (#15628)
  • [pyupgrade] Ignore is_typeddict and TypedDict for deprecated-import (UP035) (#15800)

CLI

  • Fix formatter warning message for flake8-quotes option (#15788)
  • Implement tab autocomplete for ruff config (#15603)

Bug fixes

  • [flake8-comprehensions] Do not emit unnecessary-map diagnostic when lambda has different arity (C417) (#15802)
  • [flake8-comprehensions] Parenthesize sorted when needed for unnecessary-call-around-sorted (C413) (#15825)
  • [pyupgrade] Handle end-of-line comments for quoted-annotation (UP037) (#15824)

Documentation

  • Add missing config docstrings (#15803)
  • Add references to trio.run_process and anyio.run_process (#15761)
  • Use uv init --lib in tutorial (#15718)

0.9.3

Preview features

  • [airflow] Argument fail_stop in DAG has been renamed as fail_fast (AIR302) (#15633)
  • [airflow] Extend AIR303 with more symbols (#15611)
  • [flake8-bandit] Report all references to suspicious functions (S3) (#15541)
  • [flake8-pytest-style] Do not emit diagnostics for empty for loops (PT012, PT031) (#15542)
  • [flake8-simplify] Avoid double negations (SIM103) (#15562)
  • [pyflakes] Fix infinite loop with unused local import in __init__.py (F401) (#15517)
  • [pylint] Do not report methods with only one EM101-compatible raise (PLR6301) (#15507)
  • [pylint] Implement redefined-slots-in-subclass (W0244) (#9640)

... (truncated)

Commits
  • 854ab03 Bump version to 0.9.4 (#15831)
  • b0b8b06 Remove semicolon after TypeScript interface definition (#15827)
  • 451f251 [red-knot] Clarify behavior when redeclaring base class attributes (#15826)
  • 13cf3e6 [flake8-comprehensions] Parenthesize sorted when needed for `unnecessary-...
  • 56f956a [pyupgrade] Handle end-of-line comments for quoted-annotation (UP037) (...
  • 7a10a40 [flake8-bandit] Permit suspicious imports within stub files (S4) (#15822)
  • 3125332 [red-knot] Format mdtest snippets with the latest version of black (#15819)
  • 15d886a [red-knot] Consider all definitions after terminal statements unreachable (#1...
  • e1c9d10 [flake8-comprehensions] Do not emit unnecessary-map diagnostic when lambd...
  • 23c9884 Preserve quotes in generated f-strings (#15794)
  • Additional commits viewable in compare view

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📚 Documentation preview 📚: https://pycytominer--502.org.readthedocs.build/en/502/

@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Feb 1, 2025
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d33bs commented Feb 2, 2025

Depends on #505 for passing tests.

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d33bs commented Feb 3, 2025

@dependabot rebase

Bumps the python-packages group with 5 updates:

| Package | From | To |
| --- | --- | --- |
| [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.6.0` | `1.6.1` |
| [boto3](https://github.com/boto/boto3) | `1.35.88` | `1.36.3` |
| [pre-commit](https://github.com/pre-commit/pre-commit) | `4.0.1` | `4.1.0` |
| [commitizen](https://github.com/commitizen-tools/commitizen) | `4.1.0` | `4.1.1` |
| [ruff](https://github.com/astral-sh/ruff) | `0.8.4` | `0.9.4` |


Updates `scikit-learn` from 1.6.0 to 1.6.1
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.6.0...1.6.1)

Updates `boto3` from 1.35.88 to 1.36.3
- [Release notes](https://github.com/boto/boto3/releases)
- [Commits](boto/boto3@1.35.88...1.36.3)

Updates `pre-commit` from 4.0.1 to 4.1.0
- [Release notes](https://github.com/pre-commit/pre-commit/releases)
- [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md)
- [Commits](pre-commit/pre-commit@v4.0.1...v4.1.0)

Updates `commitizen` from 4.1.0 to 4.1.1
- [Release notes](https://github.com/commitizen-tools/commitizen/releases)
- [Changelog](https://github.com/commitizen-tools/commitizen/blob/master/CHANGELOG.md)
- [Commits](commitizen-tools/commitizen@v4.1.0...v4.1.1)

Updates `ruff` from 0.8.4 to 0.9.4
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.8.4...0.9.4)

---
updated-dependencies:
- dependency-name: scikit-learn
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: boto3
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: pre-commit
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: commitizen
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: ruff
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/pip/python-packages-5cec1bd168 branch from 156e4a9 to 69978fc Compare February 3, 2025 21:51
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 94.44%. Comparing base (4748df5) to head (69978fc).

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #502   +/-   ##
=======================================
  Coverage   94.44%   94.44%           
=======================================
  Files          57       57           
  Lines        3188     3188           
=======================================
  Hits         3011     3011           
  Misses        177      177           
Flag Coverage Δ
unittests 94.44% <ø> (ø)

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@dependabot squash and merge

@dependabot dependabot bot merged commit e33ce63 into main Feb 3, 2025
12 checks passed
@dependabot dependabot bot deleted the dependabot/pip/python-packages-5cec1bd168 branch February 3, 2025 22:07
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