Apply scikit-package v0.1.0 to cifkit - autoamtic docformatter, prettier, codespell

[bobleesj]

What type of PR is this? (check all applicable)

• Refactor
• Feature
• Bug Fix
• Optimization
• Documentation Update

Description (Screenshots, files, etc)

Use scikit-package version 0.1.0 for cifkit.

Checklist

• Are the tests passing?
• If it's a new feature, have tests been written?
• Have you added the .rst news file?

Added to documentation?

• README.md
• Official documentation
• Google Codelab
• No documentation needed

[codecov]

Codecov Report

Attention: Patch coverage is 97.22222% with 1 line in your changes missing coverage. Please review.

Project coverage is 97.29%. Comparing base (241c160) to head (d0200b4).
Report is 13 commits behind head on main.

Files with missing lines	Patch %	Lines
tests/core/models/test_cif.py	50.00%	1 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #73   +/-   ##
=======================================
  Coverage   97.29%   97.29%           
=======================================
  Files          35       36    +1     
  Lines        1403     1406    +3     
=======================================
+ Hits         1365     1368    +3     
  Misses         38       38           

Files with missing lines	Coverage Δ
tests/conftest.py	91.66% <100.00%> (ø)
tests/core/coordination/test_composition.py	100.00% <100.00%> (ø)
tests/core/coordination/test_filter.py	100.00% <100.00%> (ø)
tests/core/coordination/test_geometry.py	100.00% <ø> (ø)
tests/core/coordination/test_site.py	100.00% <ø> (ø)
tests/core/data/test_radius_handler.py	100.00% <100.00%> (ø)
tests/core/models/test_cif_ensemble.py	100.00% <100.00%> (ø)
tests/core/occupancy/test_mixing.py	100.00% <100.00%> (ø)
tests/core/preprocessors/test_environment.py	100.00% <ø> (ø)
tests/core/preprocessors/test_format.py	100.00% <100.00%> (ø)
... and 7 more