bethac07
Follow
-
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Bikeshed Other UpdatedJan 6, 2025 -
instanseg Public
Forked from instanseg/instansegJupyter Notebook Apache License 2.0 UpdatedSep 25, 2024 -
instance_segmentation Public
Forked from dlmbl/instance_segmentationJupyter Notebook UpdatedAug 23, 2024 -
-
UNet_3D_C_elegans Public
Forked from COBA-NIH/UNet_3D_C_elegans3D segmentation of the C. elegans germ line
Jupyter Notebook UpdatedMay 8, 2024 -
qi_2024_analysis_lab_manual Public
-
bioimagebook.github.io Public
Forked from bioimagebook/bioimagebook.github.ioAn introduction to bioimage analysis - http://bioimagebook.github.io
Python UpdatedMar 21, 2024 -
profiling-recipe Public
Forked from cytomining/profiling-recipeImage-based Profiling Recipe
-
CellProfiler Public
Forked from CellProfiler/CellProfilerAn open-source application for biological image analysis
Python Other UpdatedDec 18, 2023 -
pycytominer Public
Forked from cytomining/pycytominercytominer python package
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 10, 2023 -
core Public
Forked from CellProfiler/coreCore classes and components used by CellProfiler
Python Other UpdatedMay 8, 2023 -
-
MicroscopyForBeginnersReferenceGuide Public
Forked from COBA-NIH/MicroscopyForBeginnersReferenceGuideA Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
-
AuSPICES Public
Forked from broadinstitute/AuSPICESAutomated System Processing Infinite Cellpainting Experiments with Step functions
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 1, 2022 -
Distributed-Something-1 Public template
Forked from DistributedScience/Distributed-SomethingRun encapsulated docker containers that do... something in the Amazon Web Services infrastructure.
Python Other UpdatedAug 30, 2022 -
distribution Public
Forked from CellProfiler/distributionEverything needed to build CellProfiler for your favorite environment.
-
pycytominer-feedstock Public
Forked from gwaybio/pycytominer-feedstockA conda-smithy repository for pycytominer.
BSD 3-Clause "New" or "Revised" License UpdatedJun 23, 2022 -
-
jupyter-book Public
Forked from jupyter-book/jupyter-bookCreate beautiful, publication-quality books and documents from computational content.
-
Distributed-Something Public archive
Forked from DistributedScience/Distributed-CellProfilerRun encapsulated docker containers that do something in the Amazon Web Services infrastructure.
Python Other UpdatedJan 3, 2022 -
cytominer_database-feedstock Public
Forked from conda-forge/cytominer_database-feedstockA conda-smithy repository for cytominer_database.
Shell BSD 3-Clause "New" or "Revised" License UpdatedJun 23, 2021 -
-
Distributed-FIJI Public
Like Distributed-CellProfiler, but for FIJI. Run FIJI scripts in parallel in the cloud, using infrastructure you define.
-
tutorials Public
Forked from CellProfiler/tutorialsCellProfiler tutorial pipelines and images
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 25, 2020 -
CellProfiler-plugins Public
Forked from CellProfiler/CellProfiler-pluginsCommunity-contributed and experimental CellProfiler modules.
Python UpdatedMay 20, 2020 -
HandyTools Public
Various tools for renaming files, working with LightCycler qPCR data, other tweaks
-
homebrew-core Public
Forked from Homebrew/homebrew-core🍻 Default formulae for the missing package manager for macOS
Ruby BSD 2-Clause "Simplified" License UpdatedJul 15, 2019 -
python-javabridge Public
Forked from LeeKamentsky/python-javabridgePython wrapper for the Java Native Interface
Python Other UpdatedJun 20, 2018 -
profiling-handbook Public
Forked from cytomining/profiling-handbookImage-based Profiling Handbook
CSS Creative Commons Zero v1.0 Universal UpdatedApr 28, 2018 -
cytominer Public
Forked from cytomining/cytominerLibrary for mining patterns in perturbation data
R Other UpdatedAug 28, 2017