Add citation file (#1074)

* add CITATION.CFF file

* add `include CITATION.CFF` to MANIFEST.in (as prompted to by the tox checks)

* typo: "Include" -> "include"

* Update CITATION.cff

Co-authored-by: Matt Graham <[email protected]>

* Update CITATION.cff

Co-authored-by: Matt Graham <[email protected]>

* add LICENSE.txt

* update setup.py

* Update setup.py

Co-authored-by: Matt Graham <[email protected]>

* Update LICENSE.txt

Co-authored-by: Matt Graham <[email protected]>

* Update MANIFEST.in

Co-authored-by: Matt Graham <[email protected]>

* Remove duplication of version keyword argument

---------

Co-authored-by: Matt Graham <[email protected]>

CITATION.cff

@@ -0,0 +1,36 @@
+# This CITATION.cff file was generated with cffinit.
+# Visit https://bit.ly/cffinit to generate yours today!
+
+cff-version: 1.2.0
+title: The Thanzi La Onse Model
+version: 1.0.0
+message: >-
+  If you use this software, please cite it using the
+  metadata from this file.
+type: software
+authors:
+  - name: Thanzi La Onse Model Development Team
+    address: >-
+      Imperial College London; University College London;
+      Kamuzu University of Health Sciences; University of
+      York
+    website: https://www.tlomodel.org/authors.html
+repository-code: 'https://github.com/UCL/TLOmodel'
+url: 'https://tlomodel.org'
+abstract: >-
+  Our fundamental aim is to develop the use of
+  epidemiological and economic science to effect a
+  step-change in the way that health priorities are
+  addressed through policy interventions in low-income
+  countries. We are doing this by developing a model that
+  represents explicitly the generation of health gains in a
+  population, which can be used to examine the effect of
+  resource allocation, management and clinical practice, in
+  order to contribute to informing decision-making.
+keywords:
+  - Epidemiology
+  - Healthcare Systems
+  - Health-Economics
+  - Simulation Modelling
+  - Individual-based Modelling
+license: MIT

LICENSE.txt

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2023 The Thanzi La Onse Model Development Team
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

MANIFEST.in

@@ -8,6 +8,8 @@ include .bumpversion.cfg
 include .coveragerc
 include tox.ini
 include tlo.example.conf
+include CITATION.cff
+include LICENSE.txt
 
 exclude .editorconfig
 recursive-exclude .ci *

setup.py

@@ -18,12 +18,12 @@ def read(*names, **kwargs):
 
 setup(
     name='tlo',
-    version='0.1.0',
+    version='1.0.0',
     description='Thanzi la Onse Epidemiology Model',
     long_description=re.compile(
         '^.. start-badges.*^.. end-badges', re.M | re.S).sub('', read('README.rst')),
     long_description_content_type="text/x-rst",
-    author='The Thanzi la Onse Team',
+    author='Thanzi La Onse Model Development Team',
     author_email='[email protected]',
     url='https://github.com/UCL/TLOmodel',
     packages=find_packages('src'),