Prepare release (#166)

* updated docs and README.md

* updated NEWS, reflect new version in configure

* update version to 0.8.0 plus to small edits

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: tiledb
 Type: Package
-Version: 0.7.1
+Version: 0.8.0
 Title: Sparse and Dense Multidimensional Array Storage Engine for Data Science
 Author: TileDB, Inc.
 Copyright: TileDB, Inc.

README.md

@@ -1,6 +1,7 @@
 <a href="https://tiledb.com"><img src="https://github.com/TileDB-Inc/TileDB/raw/dev/doc/source/_static/[email protected]" alt="TileDB logo" width="400"></a>
 
 [![Build Status](https://img.shields.io/azure-devops/build/tiledb-inc/836549eb-f74a-4986-a18f-7fbba6bbb5f0/24/master?label=Azure%20Pipelines&logo=azure-pipelines&style=flat-square)](https://dev.azure.com/TileDB-Inc/CI/_build/latest?definitionId=24&branchName=master)
+![R-CMD-check](https://github.com/TileDB-Inc/TileDB-R/workflows/R-CMD-check/badge.svg)
 
 # TileDB-R
 
@@ -17,9 +18,9 @@ API](https://docs.tiledb.com/main/).
 
 ## Installation
 
-TileDB needs to be present, and can to be installed first (from a package or from source)
-for the TileDB R package to build and link correctly. For macOS and Linux, a precompiled
-shared library is used during the installation of this R package.
+TileDB Embedded needs to be present, and can to be installed first (from a package or from source)
+for the TileDB R package to build and link correctly. If no system installation is found, a
+precompiled shared library is used during the installation of this R package.
 
 As the TileDB R package has not been published on [CRAN](https://cran.r-project.org/), it must be
 installed from source.
@@ -34,7 +35,7 @@ The most recent released version can be installed from
     > library(tiledb)
     > tiledb_version()
     major minor patch
-        2     0     5
+        2     0     8
     > help(package=tiledb)
 
 If the TileDB library is installed in a custom location, you need to pass the explicit path:

_pkgdown.yml

@@ -32,6 +32,9 @@ reference:
   - starts_with("tiledb_array_schema")
   - starts_with("allows_dups")
   - matches("r_to_tiledb_type")
+  - matches("tiledb_schema_get_names")
+  - matches("tiledb_schema_get_types")
+  - matches("tiledb_schema_set_names")
 - title: Attribute
   contents:
   - starts_with("tiledb_attr")
@@ -57,6 +60,10 @@ reference:
   - starts_with("dim")
   - ends_with("tiledb_dim-method")
   - ends_with("tiledb_dim")
+- title: Query
+  desc: query object functions
+  contents:
+  - starts_with("tiledb_query")
 - title: Group
   contents:
   - starts_with("tiledb_group")
@@ -73,6 +80,10 @@ reference:
   desc:  performance stat collection functions
   contents:
   - starts_with("tiledb_stats")
+- title: VFS
+  desc: virtual file system functions
+  contents:
+  - starts_with("tiledb_vfs")
 - title: DataFrame
   desc:  data.frame functionality functions
   contents:
@@ -85,3 +96,4 @@ reference:
   contents:
   - starts_with("tiledb_version")
   - matches("tiledb-package")
+  - matches("limitTileDBCores")

configure

@@ -1,6 +1,6 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for TileDB-R 0.7.1.
+# Generated by GNU Autoconf 2.69 for TileDB-R 0.8.0.
 #
 #
 # Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc.
@@ -577,8 +577,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='TileDB-R'
 PACKAGE_TARNAME='tiledb-r'
-PACKAGE_VERSION='0.7.1'
-PACKAGE_STRING='TileDB-R 0.7.1'
+PACKAGE_VERSION='0.8.0'
+PACKAGE_STRING='TileDB-R 0.8.0'
 PACKAGE_BUGREPORT=''
 PACKAGE_URL=''
 
@@ -1243,7 +1243,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures TileDB-R 0.7.1 to adapt to many kinds of systems.
+\`configure' configures TileDB-R 0.8.0 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1305,7 +1305,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of TileDB-R 0.7.1:";;
+     short | recursive ) echo "Configuration of TileDB-R 0.8.0:";;
    esac
   cat <<\_ACEOF
 
@@ -1397,7 +1397,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-TileDB-R configure 0.7.1
+TileDB-R configure 0.8.0
 generated by GNU Autoconf 2.69
 
 Copyright (C) 2012 Free Software Foundation, Inc.
@@ -1649,7 +1649,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by TileDB-R $as_me 0.7.1, which was
+It was created by TileDB-R $as_me 0.8.0, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   $ $0 $@
@@ -4044,7 +4044,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by TileDB-R $as_me 0.7.1, which was
+This file was extended by TileDB-R $as_me 0.8.0, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -4097,7 +4097,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
-TileDB-R config.status 0.7.1
+TileDB-R config.status 0.8.0
 configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"
 

configure.ac

@@ -24,7 +24,7 @@
 
 ## require at least autoconf 2.69
 AC_PREREQ([2.69])
-AC_INIT([TileDB-R], [0.7.1])
+AC_INIT([TileDB-R], [0.8.0])
 
 ## this has to come early to affect other queries involving R
 : ${R_HOME=`R RHOME`}

docs/pkgdown.yml

@@ -3,5 +3,5 @@ pkgdown: 1.5.1
 pkgdown_sha: ~
 articles:
   introduction: introduction.html
-last_built: 2020-07-01T16:03Z
+last_built: 2020-08-28T01:05Z