ignored noise calibration data in generate_MCIR_data.py

SyneRBI · May 24, 2024 · fd1eba7 · fd1eba7
1 parent 9b344b3
commit fd1eba7
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Showing 2 changed files with 7 additions and 3 deletions.
diff --git a/examples/Python/PETMR/generate_MCIR_data.py b/examples/Python/PETMR/generate_MCIR_data.py
@@ -180,7 +180,7 @@ def main():
     template_PET_im = pet.ImageData(template_PET_raw)
 
     # Get template MR image from template raw
-    template_MR_raw = mr.AcquisitionData(template_MR_raw_path)
+    template_MR_raw = mr.AcquisitionData(template_MR_raw_path, False, mr.IgnoreMask())
     template_MR_raw.sort_by_time()
     template_MR_raw = mr.preprocess_acquisition_data(template_MR_raw)
     template_MR_im = simple_mr_recon(template_MR_raw)

diff --git a/src/xGadgetron/pGadgetron/Gadgetron.py b/src/xGadgetron/pGadgetron/Gadgetron.py
@@ -665,8 +665,8 @@ def __calc_from_acquisitions(self, data, method_name):
             raise AssertionError("The handle for data is None. Please pass valid acquisition data.")
 
         dcw = compute_kspace_density(data)
-
         data = data * dcw
+
         if method_name == 'Inati':
 
             try:
@@ -686,8 +686,12 @@ def __calc_from_acquisitions(self, data, method_name):
             self.fill(csm.astype(numpy.complex64))
 
         elif method_name == 'SRSS':
+
             try_calling(pygadgetron.cGT_computeCoilSensitivities(self.handle, data.handle))
 
+        else:
+            raise error('Unknown method %s' % method_name)
+
     def __calc_from_images(self, data, method_name):
 
         if data.handle is None:
@@ -1708,7 +1712,7 @@ def preprocess_acquisition_data(input_data):
         ['NoiseAdjustGadget', \
          'AsymmetricEchoAdjustROGadget', \
          'RemoveROOversamplingGadget'])
-    
+
 def set_grpe_trajectory(ad, traj=None):
     '''
     Function that fills the trajectory of AcquisitionData with golden angle radial