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Update PhysiCell_signal_behavior.cpp
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transition is now the primary term, instead of transformation. better match to the Cell preprint
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MathCancer committed Jan 20, 2025
1 parent d4662bb commit 7580d11
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions core/PhysiCell_signal_behavior.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -514,18 +514,19 @@ void setup_signal_behavior_dictionaries( void )
behavior_to_int[temp] = map_index;
}

// transformation
// transformation / transition
for( int i=0; i < n ; i++ )
{
map_index++;
Cell_Definition* pCD = cell_definitions_by_type[i];
std::string temp = "transform to " + pCD->name;
// std::string temp = "transform to " + pCD->name;
std::string temp = "transition to " + pCD->name;
behavior_to_int[temp] = map_index;
int_to_behavior[map_index] = temp;
// synonym
temp = "transform to cell type " + std::to_string(pCD->type);
behavior_to_int[temp] = map_index;
temp = "transition to " + std::to_string(pCD->type);
temp = "transform to " + std::to_string(pCD->type);
behavior_to_int[temp] = map_index;
temp = "transition to cell type " + std::to_string(pCD->type);
behavior_to_int[temp] = map_index;
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