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* Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM * Added TODO's for what tests to write * Removed type signatures and added TODO for futures * Removed type signatures * Removed type signatures * Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this * Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits * Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports * Added and updated CHANGELOG * Bumped project version numbers for new release * Removed as it was an early testing prototype file * Began revising tutorial documentation * Removed Manifest file for package * Added Dates and TimeZones deps for managing age groups * Disallowed some exports and created new function for generating defaults * Added new deps Dates and TimeZones for time management * Began refactoring of GetPatientAgeGroup * Refactored GetPatientAgeGroup to correctly get age group of patients * Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings * Added SampleData compat and dependency * Renamed files and fixed docs * Fixed documentation and fixed methods for calculating age * Added helper function to determine year * Started adding first batch of tests * Added helpers file * Removed entry for SampleHealthData until merge of package occurs * Converted this function to internal helper function * Added new tests and dependencies * Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs * Added ignore for various Julia artifacts * Initial drafting of full tutorial * Finished initial beginner tutorial * Updated README with badges and documentation link * Modified footer * Updated landing page * Reordered pages on sidebar * Updated changelog for new release * Beginning draft of submission * Creating header affiliations * Autogenerated or compiled files * Ruby routine for generating header.tex * Removed Memoization dependency for user flexibility * Added dispatches to render SQL; found bug in GetPatientAgeGroup * Added get function for ethnicity * Cherry picking some files to resolve conflicts * Initial Tests for Getters, Filters, and Executors (#24) * Version 0.1.0 Release (#4) * Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM * Added TODO's for what tests to write * Removed type signatures and added TODO for futures * Removed type signatures * Removed type signatures * Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this * Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits * Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports * Added and updated CHANGELOG * Bumped project version numbers for new release * Removed as it was an early testing prototype file * Began revising tutorial documentation * Removed Manifest file for package * Added Dates and TimeZones deps for managing age groups * Disallowed some exports and created new function for generating defaults * Added new deps Dates and TimeZones for time management * Began refactoring of GetPatientAgeGroup * Refactored GetPatientAgeGroup to correctly get age group of patients * Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings * Added SampleData compat and dependency * Renamed files and fixed docs * Fixed documentation and fixed methods for calculating age * Added helper function to determine year * Started adding first batch of tests * Added helpers file * Removed entry for SampleHealthData until merge of package occurs * Converted this function to internal helper function * Added new tests and dependencies * Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs * Added ignore for various Julia artifacts * Initial drafting of full tutorial * Finished initial beginner tutorial * Updated README with badges and documentation link * Modified footer * Updated landing page * Reordered pages on sidebar * Added todo action to automatically create todos * Added todos for issues in getters * Removed dependency on HealthSampleData and compat entries * Added todosfor multiple tests that need to be created * Uncommented test sets for running and added todo for Generators * Created test for GetPatientVisits() * Created Test for ExecuteAudit() * Created test for GetMostRecentVisit * updated tests * started creating test for GetVisitCondition * Changed GetVisitCondition Test * created test for VisitFilterPersonIDs * Added test for filters.jl * Finished tests for filters * Added a test step for code coverage * Removed VSCode configurations * Bumped compat entry for HealthSampleData * Removed todos and fixed GenderFilterPersonIDs test * Removed unnecessary comments * For allowing HealthSampleData to always download sample data * Test with adding latest codecoverage version * Added code coverage badge icon Co-authored-by: TheCedarPrince <[email protected]> Co-authored-by: Chinta <[email protected]> * Simplify Age Calculations (#27) * Added SQL generation for filter statements * Removed option for internal DB calculation * Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings * Updated test suite * Removed old tests for GetPatientAgeGroup * Updated tests for helper functions * Added Additional Test Coverage for Getters and Helpers (#28) * Updated docstrings for SQL rendering * Updated docstrings, formatting, and enforced String returns for SQL dispatches * Updated test explanation * Added test suite for GetMostRecentConditions and formatted * Fix to Docs Deployment (#29) * Testing fix for docs deployment * Expected the OMOPCDMCohortCreator package to be available * Added push preview information and the edit link * Fixed deprecation warning * Final layout fixes to collapselevel * Final fix * Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30) * Configured nesting of tutorial * Updated landing page description * Broke up tutorial pages * Added revamped beginner tutorial * Overhaul of Docs (#31) * Moved beginner tutorial * Added tutorial for R usage * Updated index of tutorials * Fixed up tutorials index * Renamed R tutorial * Clarified links for tutorials * Julia on the brain * Added contributing guide * Added contributing guide * Updated API exports * Revamped overview of package * Added the most necessary of all things: emojis ✨ * Fixed up emojis * Fixed up API table of contents * Fixed emojis * Updated main features of package * Removed emoji * Updated and fixed Citation file (#32) * Expanded CI to test on Windows & OSX and Julia Versions 1, Nightly, and LTS (#35) * Tag New Release v2.0.0 (#33) * Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM * Added TODO's for what tests to write * Removed type signatures and added TODO for futures * Removed type signatures * Removed type signatures * Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this * Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits * Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports * Added and updated CHANGELOG * Bumped project version numbers for new release * Removed as it was an early testing prototype file * Began revising tutorial documentation * Removed Manifest file for package * Added Dates and TimeZones deps for managing age groups * Disallowed some exports and created new function for generating defaults * Added new deps Dates and TimeZones for time management * Began refactoring of GetPatientAgeGroup * Refactored GetPatientAgeGroup to correctly get age group of patients * Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings * Added SampleData compat and dependency * Renamed files and fixed docs * Fixed documentation and fixed methods for calculating age * Added helper function to determine year * Started adding first batch of tests * Added helpers file * Removed entry for SampleHealthData until merge of package occurs * Converted this function to internal helper function * Added new tests and dependencies * Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs * Added ignore for various Julia artifacts * Initial drafting of full tutorial * Finished initial beginner tutorial * Updated README with badges and documentation link * Modified footer * Updated landing page * Reordered pages on sidebar * Updated changelog for new release * Beginning draft of submission * Creating header affiliations * Autogenerated or compiled files * Ruby routine for generating header.tex * Removed Memoization dependency for user flexibility * Added dispatches to render SQL; found bug in GetPatientAgeGroup * Added get function for ethnicity * Cherry picking some files to resolve conflicts * Initial Tests for Getters, Filters, and Executors (#24) * Version 0.1.0 Release (#4) * Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM * Added TODO's for what tests to write * Removed type signatures and added TODO for futures * Removed type signatures * Removed type signatures * Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this * Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits * Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports * Added and updated CHANGELOG * Bumped project version numbers for new release * Removed as it was an early testing prototype file * Began revising tutorial documentation * Removed Manifest file for package * Added Dates and TimeZones deps for managing age groups * Disallowed some exports and created new function for generating defaults * Added new deps Dates and TimeZones for time management * Began refactoring of GetPatientAgeGroup * Refactored GetPatientAgeGroup to correctly get age group of patients * Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings * Added SampleData compat and dependency * Renamed files and fixed docs * Fixed documentation and fixed methods for calculating age * Added helper function to determine year * Started adding first batch of tests * Added helpers file * Removed entry for SampleHealthData until merge of package occurs * Converted this function to internal helper function * Added new tests and dependencies * Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs * Added ignore for various Julia artifacts * Initial drafting of full tutorial * Finished initial beginner tutorial * Updated README with badges and documentation link * Modified footer * Updated landing page * Reordered pages on sidebar * Added todo action to automatically create todos * Added todos for issues in getters * Removed dependency on HealthSampleData and compat entries * Added todosfor multiple tests that need to be created * Uncommented test sets for running and added todo for Generators * Created test for GetPatientVisits() * Created Test for ExecuteAudit() * Created test for GetMostRecentVisit * updated tests * started creating test for GetVisitCondition * Changed GetVisitCondition Test * created test for VisitFilterPersonIDs * Added test for filters.jl * Finished tests for filters * Added a test step for code coverage * Removed VSCode configurations * Bumped compat entry for HealthSampleData * Removed todos and fixed GenderFilterPersonIDs test * Removed unnecessary comments * For allowing HealthSampleData to always download sample data * Test with adding latest codecoverage version * Added code coverage badge icon Co-authored-by: TheCedarPrince <[email protected]> Co-authored-by: Chinta <[email protected]> * Simplify Age Calculations (#27) * Added SQL generation for filter statements * Removed option for internal DB calculation * Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings * Updated test suite * Removed old tests for GetPatientAgeGroup * Updated tests for helper functions * Added Additional Test Coverage for Getters and Helpers (#28) * Updated docstrings for SQL rendering * Updated docstrings, formatting, and enforced String returns for SQL dispatches * Updated test explanation * Added test suite for GetMostRecentConditions and formatted * Fix to Docs Deployment (#29) * Testing fix for docs deployment * Expected the OMOPCDMCohortCreator package to be available * Added push preview information and the edit link * Fixed deprecation warning * Final layout fixes to collapselevel * Final fix * Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30) * Configured nesting of tutorial * Updated landing page description * Broke up tutorial pages * Added revamped beginner tutorial * Overhaul of Docs (#31) * Moved beginner tutorial * Added tutorial for R usage * Updated index of tutorials * Fixed up tutorials index * Renamed R tutorial * Clarified links for tutorials * Julia on the brain * Added contributing guide * Added contributing guide * Updated API exports * Revamped overview of package * Added the most necessary of all things: emojis ✨ * Fixed up emojis * Fixed up API table of contents * Fixed emojis * Updated main features of package * Removed emoji * Updated and fixed Citation file (#32) * Tagged new release * Revamped README details about package * Added docstring to ExecuteAudit Co-authored-by: VarshC <[email protected]> Co-authored-by: Chinta <[email protected]> * Moved paper document to its own branch while in progress * Quickfix to R tutorial on strep_patients * Expanded CI to test on windows, OSX, and 1.6 * Attempt at making CI process more reasonable * Removed paper directory again * Bumped for minor patch release Co-authored-by: VarshC <[email protected]> Co-authored-by: Chinta <[email protected]> Co-authored-by: VarshC <[email protected]> Co-authored-by: Chinta <[email protected]>
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