STYLE: Run clang-format, having disabled AlignConsecutiveDeclarations

Did run clang-format on the entire source tree, by:

  pixi run pre-commit-run -a clang-format

As suggested by Hans Johnson.

Examples/DataRepresentation/Image/Image4.cxx

@@ -354,7 +354,7 @@ main(int, char *[])
 
   // Software Guide : BeginCodeSnippet
   const ImageType::IndexType LeftEyeIndex = GetIndexFromMouseClick();
-  ImageType::PointType       LeftEyePoint;
+  ImageType::PointType LeftEyePoint;
   image->TransformIndexToPhysicalPoint(LeftEyeIndex, LeftEyePoint);
   // Software Guide : EndCodeSnippet
 

Examples/DataRepresentation/Image/Image5.cxx

@@ -162,7 +162,7 @@ main(int argc, char * argv[])
 
   // Software Guide : BeginCodeSnippet
   const unsigned int numberOfPixels = size[0] * size[1] * size[2];
-  auto *             localBuffer = new PixelType[numberOfPixels];
+  auto * localBuffer = new PixelType[numberOfPixels];
   // Software Guide : EndCodeSnippet
 
   constexpr double radius = 80.0;
@@ -181,7 +181,7 @@ main(int argc, char * argv[])
 
   // Software Guide : BeginCodeSnippet
   constexpr double radius2 = radius * radius;
-  PixelType *      it = localBuffer;
+  PixelType * it = localBuffer;
 
   for (unsigned int z = 0; z < size[2]; ++z)
   {

Examples/DataRepresentation/Image/RGBImage.cxx

@@ -83,12 +83,12 @@ main(int, char * argv[])
   using ReaderType = itk::ImageFileReader<ImageType>;
   // Software Guide : EndCodeSnippet
 
-  auto               reader = ReaderType::New();
+  auto reader = ReaderType::New();
   const char * const filename = argv[1];
   reader->SetFileName(filename);
   reader->Update();
 
-  const ImageType::Pointer       image = reader->GetOutput();
+  const ImageType::Pointer image = reader->GetOutput();
   constexpr ImageType::IndexType pixelIndex = { { 25, 35, 0 } };
 
   // Software Guide : BeginLatex

Examples/DataRepresentation/Mesh/AutomaticMesh.cxx

@@ -140,7 +140,7 @@ main(int, char *[])
   //  Software Guide : EndLatex
 
   // Software Guide : BeginCodeSnippet
-  PointType           p;
+  PointType p;
   IdentifierArrayType idArray(4);
 
   p[0] = -2;

Examples/DataRepresentation/Mesh/Mesh2.cxx

@@ -294,7 +294,7 @@ main(int, char *[])
   //  Software Guide : EndLatex
 
   // Software Guide : BeginCodeSnippet
-  CellIterator       cellIterator = mesh->GetCells()->Begin();
+  CellIterator cellIterator = mesh->GetCells()->Begin();
   const CellIterator end = mesh->GetCells()->End();
   // Software Guide : EndCodeSnippet
 
@@ -326,7 +326,7 @@ main(int, char *[])
   while (cellIterator != end)
   {
     MeshType::CellType * cellptr = cellIterator.Value();
-    auto *               line = dynamic_cast<LineType *>(cellptr);
+    auto * line = dynamic_cast<LineType *>(cellptr);
     if (line == nullptr)
     {
       continue;

Examples/DataRepresentation/Mesh/Mesh3.cxx

@@ -128,7 +128,7 @@ main(int, char *[])
 
   // Software Guide : BeginCodeSnippet
   CellType::CellAutoPointer line;
-  constexpr unsigned int    numberOfCells = numberOfPoints - 1;
+  constexpr unsigned int numberOfCells = numberOfPoints - 1;
   for (unsigned int cellId = 0; cellId < numberOfCells; ++cellId)
   {
     line.TakeOwnership(new LineType);
@@ -218,7 +218,7 @@ main(int, char *[])
   //  Software Guide : EndLatex
 
   // Software Guide : BeginCodeSnippet
-  CellDataIterator       cellDataIterator = mesh->GetCellData()->Begin();
+  CellDataIterator cellDataIterator = mesh->GetCellData()->Begin();
   const CellDataIterator end = mesh->GetCellData()->End();
   // Software Guide : EndCodeSnippet
 

Examples/DataRepresentation/Mesh/MeshCellVisitor2.cxx

@@ -137,8 +137,8 @@ class CustomLineVisitor
   {
     std::cout << "cell " << cellId << " is a Line " << std::endl;
     LineType::PointIdIterator pit = t->PointIdsBegin();
-    MeshType::PointType       p0;
-    MeshType::PointType       p1;
+    MeshType::PointType p0;
+    MeshType::PointType p1;
     m_Mesh->GetPoint(*pit++, &p0);
     m_Mesh->GetPoint(*pit++, &p1);
     const double length = p0.EuclideanDistanceTo(p1);

Examples/DataRepresentation/Mesh/MeshKComplex.cxx

@@ -331,7 +331,7 @@ main(int, char *[])
 
   // Software Guide : BeginCodeSnippet
   using PointIterator = MeshType::PointsContainer::ConstIterator;
-  PointIterator       pointIterator = mesh->GetPoints()->Begin();
+  PointIterator pointIterator = mesh->GetPoints()->Begin();
   const PointIterator pointEnd = mesh->GetPoints()->End();
 
   while (pointIterator != pointEnd)
@@ -602,7 +602,7 @@ main(int, char *[])
   for (unsigned int b0 = 0; b0 < n0; ++b0)
   {
     MeshType::CellIdentifier id;
-    const bool               found =
+    const bool found =
       mesh->GetBoundaryAssignment(dimension, cellId, b0, &id);
     if (found)
       std::cout << id << std::endl;
@@ -614,7 +614,7 @@ main(int, char *[])
   for (unsigned int b1 = 0; b1 < n1; ++b1)
   {
     MeshType::CellIdentifier id;
-    const bool               found =
+    const bool found =
       mesh->GetBoundaryAssignment(dimension, cellId, b1, &id);
     if (found)
     {
@@ -627,7 +627,7 @@ main(int, char *[])
   for (unsigned int b2 = 0; b2 < n2; ++b2)
   {
     MeshType::CellIdentifier id;
-    const bool               found =
+    const bool found =
       mesh->GetBoundaryAssignment(dimension, cellId, b2, &id);
     if (found)
     {
@@ -660,7 +660,7 @@ main(int, char *[])
   for (unsigned int b1 = 0; b1 < n1; ++b1)
   {
     MeshType::CellIdentifier id;
-    const bool               found =
+    const bool found =
       mesh->GetBoundaryAssignment(dimension, cellId, b1, &id);
     if (found)
     {

Examples/DataRepresentation/Mesh/MeshPolyLine.cxx

@@ -207,7 +207,7 @@ main(int, char *[])
 
   // Software Guide : BeginCodeSnippet
   using PointIterator = MeshType::PointsContainer::ConstIterator;
-  PointIterator       pointIterator = mesh->GetPoints()->Begin();
+  PointIterator pointIterator = mesh->GetPoints()->Begin();
   const PointIterator pointEnd = mesh->GetPoints()->End();
 
   while (pointIterator != pointEnd)

Examples/DataRepresentation/Mesh/MeshTraits.cxx

@@ -189,7 +189,7 @@ main(int, char *[])
 
   // Software Guide : BeginCodeSnippet
   CellType::CellAutoPointer line;
-  constexpr unsigned int    numberOfCells = numberOfPoints - 1;
+  constexpr unsigned int numberOfCells = numberOfPoints - 1;
   for (unsigned int cellId = 0; cellId < numberOfCells; ++cellId)
   {
     line.TakeOwnership(new LineType);
@@ -278,7 +278,7 @@ main(int, char *[])
   //  Software Guide : EndLatex
 
   // Software Guide : BeginCodeSnippet
-  CellDataIterator       cellDataIterator = mesh->GetCellData()->Begin();
+  CellDataIterator cellDataIterator = mesh->GetCellData()->Begin();
   const CellDataIterator end = mesh->GetCellData()->End();
   // Software Guide : EndCodeSnippet
 

Examples/DataRepresentation/Mesh/PointSet1.cxx

@@ -195,7 +195,7 @@ main(int, char *[])
   //  Software Guide : EndLatex
 
   // Software Guide : BeginCodeSnippet
-  PointType  pp;
+  PointType pp;
   const bool pointExists = pointsSet->GetPoint(1, &pp);
 
   if (pointExists)

Examples/DataRepresentation/Mesh/PointSet3.cxx

@@ -69,7 +69,7 @@ main(int, char *[])
 
   // Software Guide : BeginCodeSnippet
   unsigned int dataId = 0;
-  PixelType    value = 79;
+  PixelType value = 79;
   pointSet->SetPointData(dataId++, value);
   // Software Guide : EndCodeSnippet
 

Examples/DataRepresentation/Mesh/PointSetWithCovariantVectors.cxx

@@ -102,7 +102,7 @@ main(int, char *[])
   PointSetType::PixelType gradient;
   PointSetType::PointType point;
 
-  unsigned int     pointId = 0;
+  unsigned int pointId = 0;
   constexpr double radius = 300.0;
 
   for (unsigned int i = 0; i < 360; ++i)
@@ -139,7 +139,7 @@ main(int, char *[])
 
   // Software Guide : BeginCodeSnippet
   using PointDataIterator = PointSetType::PointDataContainer::ConstIterator;
-  PointDataIterator       pixelIterator = pointSet->GetPointData()->Begin();
+  PointDataIterator pixelIterator = pointSet->GetPointData()->Begin();
   const PointDataIterator pixelEnd = pointSet->GetPointData()->End();
 
   using PointIterator = PointSetType::PointsContainer::Iterator;

Examples/DataRepresentation/Mesh/PointSetWithVectors.cxx

@@ -99,7 +99,7 @@ main(int, char *[])
   PointSetType::PixelType tangent;
   PointSetType::PointType point;
 
-  unsigned int     pointId = 0;
+  unsigned int pointId = 0;
   constexpr double radius = 300.0;
 
   for (unsigned int i = 0; i < 360; ++i)
@@ -133,7 +133,7 @@ main(int, char *[])
 
   // Software Guide : BeginCodeSnippet
   using PointDataIterator = PointSetType::PointDataContainer::ConstIterator;
-  PointDataIterator       pixelIterator = pointSet->GetPointData()->Begin();
+  PointDataIterator pixelIterator = pointSet->GetPointData()->Begin();
   const PointDataIterator pixelEnd = pointSet->GetPointData()->End();
 
   using PointIterator = PointSetType::PointsContainer::Iterator;

Examples/DataRepresentation/Mesh/RGBPointSet.cxx

@@ -77,8 +77,8 @@ main(int, char *[])
   // Software Guide : BeginCodeSnippet
   PointSetType::PixelType pixel;
   PointSetType::PointType point;
-  unsigned int            pointId = 0;
-  constexpr double        radius = 3.0;
+  unsigned int pointId = 0;
+  constexpr double radius = 3.0;
 
   for (unsigned int i = 0; i < 360; ++i)
   {
@@ -108,7 +108,7 @@ main(int, char *[])
 
   // Software Guide : BeginCodeSnippet
   using PointIterator = PointSetType::PointsContainer::ConstIterator;
-  PointIterator       pointIterator = pointSet->GetPoints()->Begin();
+  PointIterator pointIterator = pointSet->GetPoints()->Begin();
   const PointIterator pointEnd = pointSet->GetPoints()->End();
   while (pointIterator != pointEnd)
   {
@@ -142,7 +142,7 @@ main(int, char *[])
 
   // Software Guide : BeginCodeSnippet
   using PointDataIterator = PointSetType::PointDataContainer::ConstIterator;
-  PointDataIterator       pixelIterator = pointSet->GetPointData()->Begin();
+  PointDataIterator pixelIterator = pointSet->GetPointData()->Begin();
   const PointDataIterator pixelEnd = pointSet->GetPointData()->End();
   while (pixelIterator != pixelEnd)
   {

Examples/DataRepresentation/Path/PolyLineParametricPath1.cxx

@@ -85,7 +85,7 @@ main(int argc, char * argv[])
 
   // Software Guide : BeginCodeSnippet
   const ImageType::ConstPointer image = reader->GetOutput();
-  auto                          path = PathType::New();
+  auto path = PathType::New();
 
   using ContinuousIndexType = PathType::ContinuousIndexType;
   ContinuousIndexType cindex;
@@ -94,7 +94,7 @@ main(int argc, char * argv[])
   ImagePointType origin = image->GetOrigin();
 
   ImageType::SpacingType spacing = image->GetSpacing();
-  ImageType::SizeType    size = image->GetBufferedRegion().GetSize();
+  ImageType::SizeType size = image->GetBufferedRegion().GetSize();
 
   ImagePointType point;
 

Examples/Filtering/AntiAliasBinaryImageFilter.cxx

@@ -67,7 +67,7 @@ main(int argc, char * argv[])
   const char * outputFilename1 = argv[2];
   const char * outputFilename2 = argv[3];
 
-  double       maximumRMSError = 0.01;
+  double maximumRMSError = 0.01;
   unsigned int numberOfIterations = 50;
 
   if (argc > 4)

Examples/Filtering/BilateralImageFilter.cxx

@@ -185,7 +185,7 @@ main(int argc, char * argv[])
 
   // Software Guide : BeginCodeSnippet
   constexpr unsigned int Dimension = InputImageType::ImageDimension;
-  double                 domainSigmas[Dimension];
+  double domainSigmas[Dimension];
   for (double & domainSigma : domainSigmas)
   {
     domainSigma = std::stod(argv[3]);

Examples/Filtering/CompositeFilterExample.cxx

@@ -137,9 +137,9 @@ class CompositeExampleImageFilter : public ImageToImageFilter<TImage, TImage>
   //  Software Guide : EndLatex
 
   //  Software Guide : BeginCodeSnippet
-  typename GradientType::Pointer  m_GradientFilter;
+  typename GradientType::Pointer m_GradientFilter;
   typename ThresholdType::Pointer m_ThresholdFilter;
-  typename RescalerType::Pointer  m_RescaleFilter;
+  typename RescalerType::Pointer m_RescaleFilter;
 
   PixelType m_Threshold;
 };
@@ -233,7 +233,7 @@ CompositeExampleImageFilter<TImage>::GenerateData()
 template <typename TImage>
 void
 CompositeExampleImageFilter<TImage>::PrintSelf(std::ostream & os,
-                                               Indent         indent) const
+                                               Indent indent) const
 {
   Superclass::PrintSelf(os, indent);
 

Examples/Filtering/CurvatureAnisotropicDiffusionImageFilter.cxx

@@ -149,9 +149,9 @@ main(int argc, char * argv[])
 
 
   const unsigned int numberOfIterations = std::stoi(argv[3]);
-  const double       timeStep = std::stod(argv[4]);
-  const double       conductance = std::stod(argv[5]);
-  const bool         useImageSpacing = (argc != 6);
+  const double timeStep = std::stod(argv[4]);
+  const double conductance = std::stod(argv[5]);
+  const bool useImageSpacing = (argc != 6);
 
   //  Software Guide : BeginLatex
   //

Examples/Filtering/CurvatureFlowImageFilter.cxx

@@ -158,7 +158,7 @@ main(int argc, char * argv[])
 
 
   const unsigned int numberOfIterations = std::stoi(argv[3]);
-  const double       timeStep = std::stod(argv[4]);
+  const double timeStep = std::stod(argv[4]);
 
 
   //  Software Guide : BeginLatex

Examples/Filtering/DiffusionTensor3DReconstructionImageFilter.cxx

@@ -79,10 +79,10 @@ main(int argc, char * argv[])
   }
 
   constexpr unsigned int Dimension = 3;
-  unsigned int           numberOfImages = 0;
-  unsigned int           numberOfGradientImages = 0;
-  bool                   readb0 = false;
-  double                 b0 = 0;
+  unsigned int numberOfImages = 0;
+  unsigned int numberOfGradientImages = 0;
+  bool readb0 = false;
+  double b0 = 0;
 
   using PixelType = unsigned short;
   using ImageType = itk::VectorImage<unsigned short, 3>;
@@ -138,7 +138,7 @@ main(int argc, char * argv[])
     img->GetMetaDataDictionary();
   std::vector<std::string> imgMetaKeys = imgMetaDictionary.GetKeys();
   std::vector<std::string>::const_iterator itKey = imgMetaKeys.begin();
-  std::string                              metaString;
+  std::string metaString;
 
   TensorReconstructionImageFilterType::GradientDirectionType vect3d;
   const TensorReconstructionImageFilterType::GradientDirectionContainerType::

Examples/Filtering/DigitallyReconstructedRadiograph1.cxx

@@ -461,7 +461,7 @@ main(int argc, char * argv[])
 
   if (verbose)
   {
-    unsigned int                      i;
+    unsigned int i;
     const InputImageType::SpacingType spacing = image->GetSpacing();
     std::cout << std::endl << "Input ";
 
@@ -534,14 +534,14 @@ main(int argc, char * argv[])
   transform->SetTranslation(translation);
   transform->SetRotation(dtr * rx, dtr * ry, dtr * rz);
 
-  InputImageType::PointType   imOrigin = image->GetOrigin();
+  InputImageType::PointType imOrigin = image->GetOrigin();
   InputImageType::SpacingType imRes = image->GetSpacing();
 
   using InputImageRegionType = InputImageType::RegionType;
   using InputImageSizeType = InputImageRegionType::SizeType;
 
   const InputImageRegionType imRegion = image->GetBufferedRegion();
-  InputImageSizeType         imSize = imRegion.GetSize();
+  InputImageSizeType imSize = imRegion.GetSize();
 
   imOrigin[0] += imRes[0] * static_cast<double>(imSize[0]) / 2.0;
   imOrigin[1] += imRes[1] * static_cast<double>(imSize[1]) / 2.0;

Examples/Filtering/DiscreteGaussianImageFilter.cxx

@@ -142,7 +142,7 @@ main(int argc, char * argv[])
   // Software Guide : EndCodeSnippet
 
 
-  const double       gaussianVariance = std::stod(argv[3]);
+  const double gaussianVariance = std::stod(argv[3]);
   const unsigned int maxKernelWidth = std::stoi(argv[4]);
 
 

Examples/Filtering/GradientVectorFlowImageFilter.cxx

@@ -144,7 +144,7 @@ main(int argc, char * argv[])
 
 
   const unsigned int numberOfIterations = std::stoi(argv[3]);
-  const double       noiseLevel = std::stod(argv[4]);
+  const double noiseLevel = std::stod(argv[4]);
 
 
   //  Software Guide : BeginLatex