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[pre-commit.ci] pre-commit autoupdate #107
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"ssl_options = {\n", | ||
" \"ca_certs\": \"/Users/dhruvanand/Code/vector-io/aiven.pem\",\n", | ||
" \"cert_reqs\": ssl.CERT_REQUIRED,\n", | ||
"}\n", | ||
"CASSANDRA_URI = os.environ.get(\"CASSANDRA_URI\")\n", |
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Comment: Hardcoded paths for SSL certificates can lead to security vulnerabilities.
Solution: Use environment variables or configuration files to manage sensitive paths.
Reason For Comment: Using hardcoded paths exposes sensitive information and reduces portability.
"CASSANDRA_URI = os.environ.get(\"CASSANDRA_URI\")\n", | |
"ca_certs": os.environ.get('CA_CERTS_PATH'), | |
@@ -325,6 +325,7 @@ | |||
"source": [ | |||
"# convert list of dicts to pd.DataFrame\n", | |||
"import pandas as pd\n", | |||
"\n", | |||
"df = pd.DataFrame(table)\n", |
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Comment: Missing error handling for database operations.
Solution: Implement try-except blocks around database calls.
Reason For Comment: Database operations can fail, and without error handling, this can lead to unhandled exceptions.
"df = pd.DataFrame(table)\n", | |
try: | |
df = pd.DataFrame(table) | |
except Exception as e: | |
print(f'Error creating DataFrame:{e}') | |
@@ -78,6 +78,7 @@ | |||
"outputs": [], | |||
"source": [ | |||
"import lancedb\n", | |||
"\n", | |||
"uri = \"~/.lancedb\"\n", | |||
"db = lancedb.connect(uri)" | |||
] |
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Comment: Missing error handling when connecting to the database.
Solution: Implement try-except blocks around database connection code.
Reason For Comment: Failure to handle exceptions can lead to crashes and unhandled states.
] | |
try: | |
db = lancedb.connect(uri) | |
except Exception as e: | |
print(f'Error connecting to database:{e}') |
}, | ||
{ | ||
"cell_type": "code", | ||
"execution_count": null, | ||
"metadata": {}, | ||
"outputs": [], | ||
"source": [ | ||
"\n", | ||
"ds = load_dataset(\"somewheresystems/dataclysm-pubmed\", split=\"train\", streaming=True)" |
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Comment: Lack of error handling for dataset loading.
Solution: Implement error handling when loading datasets to improve robustness.
Reason For Comment: Loading datasets can fail for various reasons (e.g., network issues, missing files), and should be wrapped in try-except blocks.
"ds = load_dataset(\"somewheresystems/dataclysm-pubmed\", split=\"train\", streaming=True)" | |
try: | |
ds = load_dataset("somewheresystems/dataclysm-pubmed", split="train", streaming=True) | |
except Exception as e: | |
print(f'Error loading dataset:{e}') |
") -> Generator[pd.DataFrame, Any, None]:\n", | ||
" \n", | ||
" for offset in range(start_chunk, max_rows, rows_per_chunk):\n", | ||
" query = QUERY_TEMPLATE.format(limit=rows_per_chunk, offset=offset)\n", | ||
" query_job = bq_client.query(query)\n", |
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Comment: Lack of error handling in critical sections.
Solution: Implement try-except blocks around critical operations, especially those involving external resources.
Reason For Comment: Not handling potential exceptions can lead to crashes or undefined behavior.
" query_job = bq_client.query(query)\n", | |
try: | |
query_job = bq_client.query(query) | |
except Exception as e: | |
print(f"Error querying BigQuery:{e}") | |
@@ -35,7 +33,7 @@ | |||
"outputs": [], | |||
"source": [ |
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Comment: Avoid hardcoded file paths in the code.
Solution: Use configuration files or environment variables to manage paths.
Reason For Comment: This can lead to issues when the code is run in different environments.
"source": [ | |
jsonl_file = os.getenv('JSONL_FILE_PATH') |
" embeddings,\n", | ||
" text_column=\"title\",\n", | ||
" model_id=\"openai-text-embedding-3-small\",\n", | ||
")" | ||
] | ||
}, |
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Comment: Potential security risk with unvalidated input in database operations.
Solution: Ensure all inputs are validated and sanitized before use.
Reason For Comment: Unvalidated input can lead to SQL injection or other vulnerabilities.
}, | |
model_id=sanitize_input("openai-text-embedding-3-small") |
@@ -73,8 +73,8 @@ | |||
], | |||
"source": [ | |||
"# naming convention for all cloud resources\n", | |||
"VERSION = \"pubv3\" # TODO\n", |
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Comment: Avoid hardcoding values directly in the code.
Solution: Define constants for values like 'pubv3' and 'vvs-vectorio' to improve maintainability.
Reason For Comment: Hardcoded values can lead to maintenance issues and lack flexibility.
"VERSION = \"pubv3\" # TODO\n", | |
VERSION = os.getenv('VERSION', 'pubv3') # Use environment variable with fallback | |
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🔍 Code Review Summary❗ Attention Required: This push has potential issues. 🚨 Overview
🚨 Critical Issuessecurity (4 issues)1. Potential SQL Injection vulnerability in dynamic SQL queries.📁 File: src/vdf_io/import_vdf/astradb_import.py 💡 Solution: Current Code: self.session.execute(
f"CREATE TABLE IF NOT EXISTS{self.args['keyspace']}.{new_index_name}"
f' (id text PRIMARY KEY, "$vector" vector<float,{namespace_meta["dimensions"]}>)'
) Suggested Code: self.session.execute(
"CREATE TABLE IF NOT EXISTS ?.? (id text PRIMARY KEY, "$vector" vector<float,?>)" , (self.args['keyspace'], new_index_name, namespace_meta["dimensions"])
) 2. Use of hardcoded paths and lack of configuration management.📁 File: src/vdf_io/notebooks/similar-words.ipynb 💡 Solution: Current Code: scope_df = pd.read_parquet(
"/Users/dhruvanand/Code/latent-scope/latentscope-working/homophones2/scopes/scopes-001.parquet"
) Suggested Code: scope_df = pd.read_parquet(
os.path.join(os.getenv('SCOPE_DATA_PATH', '/default/path'), 'scopes-001.parquet')
) 3. Potential inefficiency in data processing loops.📁 File: src/vdf_io/notebooks/tpuf-qs.ipynb 💡 Solution: Current Code: for i in tqdm(range(100)):
# 10k random unique ids without replacement Suggested Code: for i, row in tqdm(enumerate(ns.vectors()), total=20000):
if i > 10000:
break
ns.delete(row.id) 4. Use of hardcoded values for configuration.📁 File: src/vdf_io/notebooks/vespa-trial.ipynb 💡 Solution: Current Code: app = Vespa(url="https://api.cord19.vespa.ai", cert=None, vespa_cloud_secret_token=None) Suggested Code: url = os.getenv('VESPA_URL', 'https://api.cord19.vespa.ai')
app = Vespa(url=url, cert=None, vespa_cloud_secret_token=os.getenv('VESPA_SECRET_TOKEN'))
Useful Commands
|
updates: - [github.com/astral-sh/ruff-pre-commit: v0.5.6 → v0.9.6](astral-sh/ruff-pre-commit@v0.5.6...v0.9.6)
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for more information, see https://pre-commit.ci
Comprehensive Code Quality and Formatting Improvements
Enhance code quality and readability across the project through linter updates and consistent formatting practices.
astradb_import.py
.These changes significantly enhance code maintainability and readability, facilitating easier collaboration and future development.
Original Description
# Update Ruff Linter to v0.9.4**
Upgrade the Ruff linter to the latest version.
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This update will ensure the codebase is checked against the latest Ruff rules and best practices.
Original Description
# Comprehensive Code Quality Enhancements**
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Consolidate improvements in code quality, readability, and linter updates across multiple PRs.
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These changes collectively enhance code quality, maintainability, and developer experience, ensuring a more consistent and efficient codebase.
Original Description
# Update Ruff Pre-Commit Hook Version**
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Upgrade the Ruff pre-commit hook to the latest version for improved linting capabilities.
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Enhances code quality checks by incorporating the latest linting features and bug fixes.
Original Description
# Comprehensive Update on Linter and Vertex AI Notebook**
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Consolidate improvements in code quality and usability across the Ruff linter and Vertex AI notebook.
flush_batch_to_db
function using a context manager.qdrant_import.py
file.**
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These updates collectively enhance code performance, maintainability, and usability for data processing and machine learning tasks.
Original Description
# Update Ruff Linter Version**
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Update the Ruff linter version used in the pre-commit configuration.
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This update will bring in the latest features and bug fixes from the Ruff linter, improving the overall code quality and consistency.
Original Description
# Comprehensive Code Improvements and Dependency Updates**
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Update dependencies, refactor code for improved readability, and enhance maintainability across multiple files and notebooks.
with
statements inastradb_import.py
andqdrant_import.py
for better readability.**
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These changes improve code maintainability and readability, ensure the latest linting standards are applied, and optimize the Vertex AI index creation and deployment process.
Original Description
# Comprehensive Code Refactor and Dependency Update**
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Update dependencies and improve code readability across multiple files.
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The changes enhance code maintainability and readability, improve efficiency and modularity, and enable better handling of large datasets and deployment of Vertex AI indexes.
Original Description
# Update Ruff Pre-Commit Hook Version**
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Upgrade the Ruff pre-commit hook to a newer version.
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Enhances linting capabilities and may introduce new features or fixes from the updated version.
Original Description
# Comprehensive Codebase Enhancements**
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Consolidate improvements across linting, database operations, and notebook formatting for enhanced performance and readability.
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These enhancements lead to a more efficient codebase, improved user experience in notebooks, and easier maintenance for future developers.
Original Description
# Update Ruff Linter to v0.8.1**
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Update the Ruff linter to the latest version.
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This update will apply the latest Ruff linter rules and improvements to the codebase, helping to maintain code quality and consistency.
Original Description
# Comprehensive Update on Linter and Vertex AI Integration**
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Integrate the latest Ruff linter version and demonstrate the use of Vertex AI for creating a scalable vector search system with BigQuery datasets.
.pre-commit-config.yaml
for improved linter performance.astradb_import.py
andqdrant_import.py
for better database import efficiency.**
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These updates improve code quality and performance while enabling a robust, production-ready vector search capability leveraging Vertex AI and BigQuery.
Original Description
# Update Ruff Pre-commit Hook Version**
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Upgrade the Ruff pre-commit hook to a newer version for improved linting capabilities.
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This change may enhance code quality checks by incorporating the latest linting features and bug fixes.
Original Description
# Comprehensive Code Quality and Readability Improvements in Jupyter Notebooks**
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Enhance code quality, readability, and maintainability across Jupyter notebooks.
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These changes will significantly improve the overall readability and maintainability of the notebooks, facilitating easier understanding and modifications for future developers.
Original Description
# Update Ruff Pre-Commit Hook Version**
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Upgrade the Ruff pre-commit hook to a newer version for improved linting capabilities.
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This change may enhance code quality by incorporating the latest linting features and fixes.
Original Description
# Comprehensive Code Quality Enhancements Across Notebooks**
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Consolidate improvements in code quality, readability, and maintainability across multiple Jupyter notebooks.
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These enhancements collectively improve code quality, readability, and maintainability, facilitating easier understanding and modifications for developers.
Original Description
# Update Ruff Pre-Commit Hook Version**
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Upgrade the Ruff pre-commit hook to a newer version for improved linting.
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Enhances code quality checks by incorporating the latest linting features and bug fixes.
Original Description
# Comprehensive Code Improvements**
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Upgrade dependencies, standardize code formatting, and optimize notebook content for improved readability and maintainability.
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These changes enhance code maintainability and readability, ensuring the codebase adheres to best practices and is easier for future developers to understand and work with.
Original Description
# Update Ruff Pre-Commit Hook Version**
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Upgrade the Ruff linter to a newer version for improved functionality.
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Enhances linting capabilities and may introduce new features or fixes from the updated version.
Original Description
# Unified PR Summary: Code Cleanup and Vertex AI Quickstart**
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Update code formatting and dependencies across multiple Jupyter notebooks, and refactor a Vertex AI quickstart notebook for improved readability, performance, and maintainability.
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The changes enhance code maintainability and readability, improve performance, and increase the flexibility of the Vertex AI quickstart notebook.
Original Description
# Update Ruff Linter to v0.7.1**
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Update the Ruff linter to the latest version.
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The updated linter version will provide improved linting capabilities and bug fixes, helping to ensure consistent code style and quality.
Original Description
# Comprehensive Code Quality Improvements**
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Enhance code quality, readability, and maintainability across various components.
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These changes collectively lead to a more robust, maintainable, and user-friendly codebase, facilitating future development and collaboration.
Original Description
# Update Ruff Linter to v0.7.0**
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Upgrade the Ruff linter to the latest version.
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This upgrade will bring the latest linting improvements and bug fixes to the codebase.
Original Description
# Upgrade Ruff Linter Version**
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Update the Ruff pre-commit hook to the latest version (v0.6.9).
aiven-qs.ipynb
notebook.astra_usage.ipynb
notebook.**
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The upgrade to the latest Ruff linter version will ensure the codebase adheres to the latest linting standards and best practices.
Notebook Improvements
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Enhance the readability and maintainability of the Jupyter notebooks.
aiven-qs.ipynb
,astra_usage.ipynb
,chroma-qs.ipynb
, andjsonl_to_parquet.ipynb
notebooks.chroma-qs.ipynb
andjsonltgz_to_parquet.ipynb
notebooks.lance-qs.ipynb
andmedium-articles.ipynb
notebooks.**
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The changes improve the overall code quality and make the notebooks more readable and maintainable for future reference and collaboration.
Vertex AI Quickstart with BigQuery Datasets
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This notebook demonstrates how to use Vertex AI to create an approximate nearest neighbor (ANN) index from data stored in BigQuery, and deploy it as an index endpoint.
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The changes improve the overall code quality, maintainability, and efficiency of the notebook, making it easier to understand and use.
Vespa Trial
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This notebook explores the use of the Vespa search engine for text-based search and retrieval.
VespaQueryResponse
andVespaError
classes.**
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The changes make the notebook more concise and focused on the core Vespa functionality.
Weaviate Fill
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This notebook demonstrates how to use the Weaviate client library to create a new class, insert data, and perform basic operations.
insert_many
call.**
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The changes make the notebook more readable and easier to understand.
WIT ResNet
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This notebook explores the use of the Hugging Face Transformers library to load and use a pre-trained ResNet-50 model for image classification.
requests
library.**
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The changes make the notebook more focused and remove unnecessary complexity.
Overall, the changes across these notebooks improve the code quality, readability, and maintainability, making the notebooks more accessible for future reference and collaboration.
Original Description
# Update Ruff Linter Version**
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Update the Ruff linter version used in the project's pre-commit hooks.
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This update will bring the latest improvements and bug fixes from the Ruff linter, helping to maintain code quality and consistency.
Original Description
# Comprehensive Code Enhancements and Updates**************************************************Purpose:
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Improve overall code quality and readability across multiple Jupyter notebooks.
Key Changes:
**************************************************Impact:
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These changes will enhance the maintainability, readability, and overall quality of the codebase, making it easier for developers to work with the Jupyter notebooks.
Original Description
# Update Ruff Pre-Commit Hook Version**
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Upgrade the Ruff linter to a newer version for improved functionality.
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Enhances linting capabilities and potentially resolves existing issues with the previous version.
Original Description
# Upgrade Ruff Linter Version**
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Update the Ruff pre-commit hook to the latest version (v0.6.7).
.pre-commit-config.yaml
file.**
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This change will ensure the codebase is linted with the latest version of the Ruff linter, which includes bug fixes and new linting rules.
Improve Notebook Formatting
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Enhance the formatting and readability of the Jupyter notebooks.
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The improved formatting will make the notebooks more readable and maintainable for developers working on the codebase.
Enhance Cassandra and Astra Usage
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Optimize the code for interacting with Cassandra and Astra databases.
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These changes will make the database interaction code more robust and easier to understand for future contributors.
Refactor Chroma Usage
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Simplify and streamline the usage of the Chroma vector database.
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The refactored Chroma code will be more concise and easier to read, improving the overall maintainability of the codebase.
Miscellaneous Improvements
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Address various minor issues and improve the overall code quality.
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These changes will make the codebase more readable, maintainable, and adhere to best practices.
Vertex AI Quickstart with BigQuery Datasets
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This notebook demonstrates how to use Vertex AI to create an approximate nearest neighbor (ANN) index from text data stored in BigQuery, and deploy the index as an endpoint.
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The changes improve the efficiency and flexibility of the notebook, allowing users to work with larger datasets and customize the index creation process to their needs.
Original Description
# Update Ruff Linter to v0.6.7**
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Update the Ruff linter to the latest version.
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This update will bring the latest bug fixes, improvements, and new features of the Ruff linter to the codebase.
Original Description
# Upgrade Ruff Linter Version**
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Update the Ruff pre-commit hook to the latest version.
.pre-commit-config.yaml
file.**
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This change will ensure the codebase is linted with the latest version of the Ruff linter, which includes bug fixes and new linting rules.
Improve Notebook Formatting
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Enhance the formatting and readability of the Jupyter notebooks.
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The improved formatting will make the notebooks more readable and maintainable for developers working on the project.
Optimize Cassandra Connection
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Enhance the Cassandra connection configuration in the
aiven-qs.ipynb
notebook.**
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The updated Cassandra connection setup will provide a more robust and maintainable configuration for interacting with the Cassandra database.
Enhance Astra Usage Notebook
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Improve the code quality and readability of the
astra_usage.ipynb
notebook.**
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The changes will make the notebook more concise, easier to understand, and better aligned with the project's coding standards.
Vertex AI Quickstart with BigQuery Datasets
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This Jupyter notebook demonstrates how to use the Vertex AI SDK to create and manage a vector search index using data from BigQuery.
query_bigquery_chunks
function.create_emb_vector_files
function for better modularity and performance.**
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These changes should improve the overall reliability, efficiency, and maintainability of the Vertex AI integration with BigQuery data.
Original Description