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Add spatial tutorials #96

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grst opened this issue Aug 3, 2023 · 3 comments

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grst commented Aug 3, 2023

There should be tutorials giving a general introudction to

spatial anlaysis with squidpy
how to use spatialdata

grst assigned LucaMarconato and giovp

grst added the new-tutorial label

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grst commented Aug 3, 2023 •

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squidpy: https://squidpy.readthedocs.io/en/latest/notebooks/tutorials/tutorial_vizgen_mouse_liver.html
subcelllular analysis with bento: https://bento-tools.readthedocs.io/en/latest/tutorial_gallery/Main_Guide.html
There's a bunch of spatialdata tutorials, but I'm missing some basic introduction to the data structure (what are the different slots, how to get data in etc.)

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LucaMarconato commented Aug 15, 2023

You are right, I add the creation of this tutorial to my todo list.

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LucaMarconato commented Sep 2, 2024

Tutorials will be ready by the scverse conference, after these they can be added to the website.

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