appveyor.yml

# DO NOT CHANGE the "init" and "install" sections below

# Download script file from GitHub
init:
  ps: |
        $ErrorActionPreference = "Stop"
        Invoke-WebRequest https://raw.githubusercontent.com/rickhelmus/r-appveyor/rtools43/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1"
        Import-Module '..\appveyor-tool.ps1'

install:
  ps: Bootstrap

cache:
  #- C:\RLibrary

# Adapt as necessary starting from here

platform: x64
environment:
    R_ARCH: x64
    BIOC_USE_DEVEL: FALSE
    USE_RTOOLS: true
    R_REMOTES_STANDALONE: true
    R_REMOTES_UPGRADE: never
    R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
    access_token:
      secure: xfAjJeVdFHYHtpdnjCfZDlJPgEkn+tSBaNNFYNZTk+ttxONOIKpV7NIeZWfa4TIf
    GITHUB_PAT:
      secure: VNNpZ/vmYAXvbXKtPfD/JNj4PPJOgbyUGMowVtH0Q//HULJrlOo62MWSuhksQ2MR
    matrix:
      - R_VERSION: stable
      - R_VERSION: oldrel

matrix:
  fast_finish: true

build_script:
  #- travis-tool.sh install_deps
  - ps: .\get_artifact.ps1
  - travis-tool.sh install_r miniCRAN git2r devtools BiocManager rversions
  - travis-tool.sh install_bioc Rdisop GenomeInfoDbData # sometimes needed as dependency may not be picked up...
  - travis-tool.sh install_bioc ropls # For KPIC2
  # - travis-tool.sh install_bioc InterpretMSSpectrum # For RAMClustR
  - travis-tool.sh install_github cran/InterpretMSSpectrum@1.3.3 # workaround for https://github.com/cbroeckl/RAMClustR/issues/48
  - travis-tool.sh install_bioc xcms qlcMatrix # for cliqueMS
  #- travis-tool.sh install_github cbroeckl/RAMClustR # pull-in necessary deps
  - travis-tool.sh install_r RAMClustR
  - travis-tool.sh install_github blosloos/nontargetData
  - travis-tool.sh install_github blosloos/nontarget
  - travis-tool.sh install_github rickhelmus/KPIC2 # pull-in necessary deps
  - travis-tool.sh install_github souravc83/fastAdaboost # For Metaclean, removed from CRAN (9/22)
  - travis-tool.sh install_github KelseyChetnik/MetaClean # pull-in necessary deps

test_script:
  #- travis-tool.sh run_tests
  - ps: $blockRdp = $true; iex ((new-object net.webclient).DownloadString('https://raw.githubusercontent.com/appveyor/ci/master/scripts/enable-rdp.ps1'))
  - Rscript make_repos.R
  - mkdir c:\Projects\Rpkgs
  - Rscript -e ".libPaths(c('C:\\Projects\\Rpkgs', .libPaths())); install.packages(c('patRoon', 'patRoonData'), repos = 'file:.', type = 'binary')"

on_success:
  - git config --global credential.helper store
  - ps: Add-Content "$HOME\.git-credentials" "https://$($env:access_token):x-oauth-basic@github.com`n"
  - git config --global user.email "something@email.com"
  - git config --global user.name "AppVeyor auto build"
  - git checkout master
  - git add bin/
  - git commit -m "automatic update [skip ci]"
  - git status
  - git push origin master