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    • Data Near Real Time Reporting micro services for Modernized NBS System
      TSQL
      Apache License 2.0
      3001Updated Feb 21, 2025Feb 21, 2025
    • This repository is created for NEDSS Helm charts.
      Smarty
      Apache License 2.0
      42010Updated Feb 21, 2025Feb 21, 2025
    • Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
      R
      Apache License 2.0
      1447867Updated Feb 21, 2025Feb 21, 2025
    • Java
      42008Updated Feb 21, 2025Feb 21, 2025
    • HTML
      Creative Commons Zero v1.0 Universal
      1223910Updated Feb 21, 2025Feb 21, 2025
    • The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      Python
      Apache License 2.0
      23204Updated Feb 21, 2025Feb 21, 2025
    • Java
      Apache License 2.0
      3003Updated Feb 21, 2025Feb 21, 2025
    • Python
      Apache License 2.0
      31121Updated Feb 21, 2025Feb 21, 2025
    • DynODE

      Public
      CDC/CFA/Predict/Scenarios ODE Modeling Framework
      Python
      Apache License 2.0
      27472Updated Feb 21, 2025Feb 21, 2025
    • Apache License 2.0
      0000Updated Feb 21, 2025Feb 21, 2025
    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      Apache License 2.0
      2667151Updated Feb 21, 2025Feb 21, 2025
    • CDC OpenViz is a library of React packages for data visualization.
      TypeScript
      Apache License 2.0
      253905Updated Feb 21, 2025Feb 21, 2025
    • ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      Kotlin
      Creative Commons Zero v1.0 Universal
      42751.3k165Updated Feb 21, 2025Feb 21, 2025
    • Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      Apache License 2.0
      38624Updated Feb 20, 2025Feb 20, 2025
    • The Public Health Data Observability (PHDO) Processing Status API (PS API) was developed to provide visibility into the status and performance of file uploads. The PS API provides the ability to receive reports about the status of uploads, and to develop custom queries to ask detailed questions about the data being uploaded and processed.
      Kotlin
      Apache License 2.0
      2304Updated Feb 20, 2025Feb 20, 2025
    • eMKF

      Public
      SAS
      Apache License 2.0
      3200Updated Feb 20, 2025Feb 20, 2025
    • Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      6600Updated Feb 20, 2025Feb 20, 2025
    • Rust
      Apache License 2.0
      2196Updated Feb 20, 2025Feb 20, 2025
    • dibbs-aws

      Public template
      HCL
      Creative Commons Zero v1.0 Universal
      2301Updated Feb 20, 2025Feb 20, 2025
    • The Public Health Data Operations (PHDO) Upload service provides secure ingestion, delivery, and observability of public health files from data senders to CDC program target locations via Application Programming Interfaces (APIs).
      Go
      Apache License 2.0
      694220Updated Feb 20, 2025Feb 20, 2025
    • A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      Creative Commons Zero v1.0 Universal
      45393Updated Feb 20, 2025Feb 20, 2025
    • ixa

      Public
      Rust
      Apache License 2.0
      214324Updated Feb 20, 2025Feb 20, 2025
    • R
      Apache License 2.0
      610235Updated Feb 20, 2025Feb 20, 2025
    • tostadas

      Public
      🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
      Python
      Apache License 2.0
      1327171Updated Feb 20, 2025Feb 20, 2025
    • SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      Java
      Creative Commons Zero v1.0 Universal
      616020917Updated Feb 20, 2025Feb 20, 2025
    • cfa_azure

      Public
      Python
      Apache License 2.0
      5961Updated Feb 20, 2025Feb 20, 2025
    • Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common data types (HL7, FHIR, CDA, XML, CSV) sent to the CDC. It helps public health stakeholders who send data to the CDC while reducing the maintenance efforts, complexity, and duplication of ingestion points to CDC.
      C#
      Apache License 2.0
      5111572Updated Feb 20, 2025Feb 20, 2025
    • zoe

      Public
      Zoe provides both broad and highly specialized implementations for bioinformatics. In particular, we focus on common data formats and methods relevant for the sequencing of RNA viruses.
      Rust
      Apache License 2.0
      1210Updated Feb 20, 2025Feb 20, 2025
    • Apache License 2.0
      2000Updated Feb 20, 2025Feb 20, 2025
    • Dockerfile
      Apache License 2.0
      1001Updated Feb 20, 2025Feb 20, 2025