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Refactor re-index program endpoint #302

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joneubank opened this issue Mar 13, 2024 · 0 comments
Open

Refactor re-index program endpoint #302

joneubank opened this issue Mar 13, 2024 · 0 comments
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@ciaranschutte
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donor-data-api new-feature Request is a new feature

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@joneubank
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The existing endpoint that allows users to request a program to be reindexed needs a few modifications to work on teh RDPC instead of in the DCC.

The endpoint is currently defined in src/index.ts: https://github.com/icgc-argo/donor-submission-aggregator/blob/develop/src/index.ts#L24

Changes needed:

  1. Move endpoint out of server definition file and into a dedicated router file
  2. Add authorization rules to this endpoint to only allow it to be accessed by RDPC Admin with Write permissions
  3. Wrap existing index endpoint in a feature flag. This flag will be enabled in the central platform environment so that the existing system can trigger a reindex. It will be disabled in the RDPC environment (default behaviour) to prevent access to this endpoint that does not enforce authorization rules.
@joneubank joneubank added new-feature Request is a new feature donor-data-api labels Mar 13, 2024
ciaranschutte added a commit that referenced this issue May 8, 2024
@ciaranschutte
Feat/#302 endpoint (#308)
84eb4d9 
* apollo setup. mirror argo-clinical (#303)

* apollo setup. mirror argo-clinical

* skip TS lib check on node modules

* fix path

* fix typo

---------

Co-authored-by: Ciaran Schutte <[email protected]>

* Gql schemas (#304)

* apollo setup. mirror argo-clinical

* fix path

* add program donor summary

* add missing utils and configs. in line with recent argo-clinical commits

* add program donor published analysis by date

* adds missing configs and utils

* fix schema merging and types

---------

Co-authored-by: Ciaran Schutte <[email protected]>

* auth function code refactor and reusable (#305)

* rearrange some auth funcs

* clean up imports

* use ego package utils

* add rdpc code from env var

* remove rdpc_code property from base query args

---------

Co-authored-by: Ciaran Schutte <[email protected]>

* fix imports

* public key and prettier

* use ego token utils

* apollo setup. mirror argo-clinical (#303)

* apollo setup. mirror argo-clinical

* skip TS lib check on node modules

* fix path

* fix typo

---------

Co-authored-by: Ciaran Schutte <[email protected]>

* Gql schemas (#304)

* apollo setup. mirror argo-clinical

* fix path

* add program donor summary

* add missing utils and configs. in line with recent argo-clinical commits

* add program donor published analysis by date

* adds missing configs and utils

* fix schema merging and types

---------

Co-authored-by: Ciaran Schutte <[email protected]>

* add route

* add env feature flag

* add json web token, get token from req, check auth

* export get public key

* add prettier org plugin

* fix build issues. update prettuer packages

* jwt env var unused

* export unused getpublickey

* npm i @apollo/server lib

* use develop branch package-lock and use npm i for missing libs

---------

Co-authored-by: Ciaran Schutte <[email protected]>
justincorrigible pushed a commit that referenced this issue Jan 7, 2025
@ciaranschutte @justincorrigible
Feat/#302 endpoint (#308)
67b29c9 
* apollo setup. mirror argo-clinical (#303)

* apollo setup. mirror argo-clinical

* skip TS lib check on node modules

* fix path

* fix typo

---------

Co-authored-by: Ciaran Schutte <[email protected]>

* Gql schemas (#304)

* apollo setup. mirror argo-clinical

* fix path

* add program donor summary

* add missing utils and configs. in line with recent argo-clinical commits

* add program donor published analysis by date

* adds missing configs and utils

* fix schema merging and types

---------

Co-authored-by: Ciaran Schutte <[email protected]>

* auth function code refactor and reusable (#305)

* rearrange some auth funcs

* clean up imports

* use ego package utils

* add rdpc code from env var

* remove rdpc_code property from base query args

---------

Co-authored-by: Ciaran Schutte <[email protected]>

* fix imports

* public key and prettier

* use ego token utils

* apollo setup. mirror argo-clinical (#303)

* apollo setup. mirror argo-clinical

* skip TS lib check on node modules

* fix path

* fix typo

---------

Co-authored-by: Ciaran Schutte <[email protected]>

* Gql schemas (#304)

* apollo setup. mirror argo-clinical

* fix path

* add program donor summary

* add missing utils and configs. in line with recent argo-clinical commits

* add program donor published analysis by date

* adds missing configs and utils

* fix schema merging and types

---------

Co-authored-by: Ciaran Schutte <[email protected]>

* add route

* add env feature flag

* add json web token, get token from req, check auth

* export get public key

* add prettier org plugin

* fix build issues. update prettuer packages

* jwt env var unused

* export unused getpublickey

* npm i @apollo/server lib

* use develop branch package-lock and use npm i for missing libs

---------

Co-authored-by: Ciaran Schutte <[email protected]>
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