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get_de_genes: At least 90% of genes do not match between the SpatialRNA and Reference objects. #229

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nasimbio opened this issue Jan 29, 2025 · 0 comments

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@nasimbio
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I am facing this issue for RCTD deconvolution of visium HD data. The visium HD has 18,085 number of genes and single cell ref has 42,496. They overlap for 17,201 genes.
The error: Error in get_de_genes(cell_type_info$info, puck.original, fc_thresh = config$fc_cutoff_reg, :
get_de_genes: At least 90% of genes do not match between the SpatialRNA and Reference objects.
I reduced the size of both to the common genes but didn't solve the issue. I'd appreciate if you help with this issue

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