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AuSPICES

Automated System Processing Infinite Cellpainting Experiments with Step functions

Setup:

Set up AWS environment, lambda functions, and step functions as detailed in SETUP.md.

Run:

  • Upload pipelines to s3://{bucket}/projects/{project}/workspace/pipelines/{batch}/
  • Upload configAWS.py and configFleet.json to s3://{bucket}/projects/{project}/workspace/lambda/{batch}/
  • Update metadatatemplate.json for your experiment.
  • Step Functions => State machines => AuSPICES
    Name = Description_of_trigger (optional)
    Input = Paste in your metadata.json.