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Sweep: Some PPR proteins are not recogniced. #14

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Irongado opened this issue Nov 27, 2024 · 0 comments
Open

Sweep: Some PPR proteins are not recogniced. #14

Irongado opened this issue Nov 27, 2024 · 0 comments
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sweep Assigns Sweep to an issue or pull request.

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@Irongado
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Hello, I'm not sure how the program works, but I found that some PPR proteins aparently does not recognize the PPR domains. I worked with GUN1, SVR7 and SOT1 from Arabidopsis, but only in SVR7 recognizes the PPR domains. I obtain this error with GUN1 and SOT1: ---------------------------------------------------------------------------
AssertionError Traceback (most recent call last)
in <cell line: 52>()
61 data = pickle.load(open(f'{RES_DIR_PICKLE}/{s}.pkl','rb'))
62 scores+=[sc for p in data for sc in [p.annotations["PS_SCORE"]]]
---> 63 assert len(scores)!=0,f'Ohhhhh it seems like no PPR motif are detected by {program} !'
64 print(f'score minima: {min(scores)}')
65 print(f'score maxima: {max(scores)}')

AssertionError: Ohhhhh it seems like no PPR motif are detected by PS_Scan !

Could you please help me. Thanks a lot

@Irongado Irongado added the sweep Assigns Sweep to an issue or pull request. label Nov 27, 2024
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