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installation.md

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The scripts require:

an environment with psi4 (for calculating dft energies)

an environment with openmm and grappa (for sampling states. grappa dependency is only due to the openmm-implementation of amber99sbildn-star and charmm with caps)

an environment with pepgen (https://github.com/hits-mbm-dev/pepgen)

an environment with openff-toolkit (for smiles string generation from pdb files)