Tasks

[Mono2]

Choose any of the tasks in this list and assign yourself to the corresponding issue. After finishing mark it as complete.
If you recognize an issue add it to this list and open an new issue, which describes the problem.

Tasks related to release of repository

• Decision about the name of the repository: CologneProtocol or CologneGeostatisticalProtocol
• Revise README.md: add Overview, add links to other solutions in R, check spelling...
• Change terminology according to table S2 and use short names
• Revise EarlyNeolithic.Rmd: update code snippets, check spelling...
• Check all comments for spelling
• Decision about sample data (sample data #2)
• Add output\ directory to the repository

Tasks related to use of the protocol
(all issues are listed here)

• Add an option weather border points of Thiessen polygone should be used or not (How to deal with Thiessen vertices at the border of the working area?  #1)
• How to handle the lag distance in variogram function? (How to handle the lag distance in the variogram function? #3)
• Option for fitting theoretical variogram (fitting theoretical variogram #4)
• Add a section for the definition of variables in the first script 00_LEC.R (Definition of variables #7)
• How to set nugget value in krige function (Nugget default value #10)
• Merging the tables isoline_stats, isoline_increase and isoline_diff into one table (Isoline_Stats Table #11)
• Cartesian vs. ellipsoidal coordinates: gstat::gDistance requires cartesian coordinates (cartesian coordinates (e.g. UTM) vs. ellipsoidal coordinates (Lat/Long) #8)
• deldir::deldir adds a 10% buffer when creating Voronoi diagrams (Voronoi Construction (Buffer Region does bias LagDist) #16)
• Solve the problem with edge effects when using local kriging (Kriging #5)
• Map units vs. km. How to handle this (Map Units vs. km #12)
• Wrong projections of exported shape and raster files (Isoline_Polygons.shp wrong Projection #13)
• Too many areas with a specific site density caused by chosen grid spacing (Number of areas with a specific site density not working #14)
• Calculation of bbox diagonal and Kriging grid relies on vertices of Voronoi diagram and not on bbox created by deldir::deldir